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Comment: Comment: How to assign cell types after integration in scRNA
11 hours ago by ATpoint 82k
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186
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Answer: Answer: ChIP-seq datasets: input samples omitted?
7 hours ago by ATpoint 82k
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222
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Comment: Comment: How to assign cell types after integration in scRNA
22 hours ago by ATpoint 82k
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872
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Comment: Comment: NGS forensics: how to know if data is fabricated
1 day ago by ATpoint 82k
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285
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Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
2 days ago by ATpoint 82k
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326
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Comment: Comment: PCA plot
2 days ago by ATpoint 82k
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3.7k
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Comment: Comment: Treatment VS Control in Single Cell RNAseq analysis
3 days ago by ATpoint 82k
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201
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Comment: Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
3 days ago by ATpoint 82k
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274
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Answer: Answer: Sequence read length shorter than flow cell specification
3 days ago by ATpoint 82k
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277
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Comment: Comment: Highest variable features in single cell data
3 days ago by ATpoint 82k
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463
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Comment: Comment: To get p-values for the TPM
4 days ago by ATpoint 82k
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323
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Comment: Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
5 days ago by ATpoint 82k
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322
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Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
5 days ago by ATpoint 82k
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273
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Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
6 days ago by ATpoint 82k
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130
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Comment: Comment: Displaced fragment length distribution in ATAC-seq
6 days ago by ATpoint 82k
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280
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Comment: Comment: Per base sequence content error in RNAseq analysis
6 days ago by ATpoint 82k
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323
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Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
6 days ago by ATpoint 82k
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1
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280
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Answer: Answer: Per base sequence content error in RNAseq analysis
6 days ago by ATpoint 82k
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537
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Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
8 days ago by ATpoint 82k
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1.2k
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Comment: Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
8 days ago by ATpoint 82k
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1.3k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
8 days ago by ATpoint 82k
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289
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Comment: Comment: Could you please assist in identifying this cluster?
9 days ago by ATpoint 82k
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5.3k
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Comment: Comment: Memory usage of picard Samsort
9 days ago by ATpoint 82k
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274
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Answer: Answer: DEseq2
10 days ago by ATpoint 82k
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469
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matching names
12 days ago by ATpoint 82k
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296
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Comment: Comment: Bwa sampe - BGI
12 days ago by ATpoint 82k
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361
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Comment: Comment: Ensembl gene id conversion
12 days ago by ATpoint 82k
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377
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Answer: Answer: Which experiments generate Position Frequency Matrix?
12 days ago by ATpoint 82k
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263
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Comment: Comment: Statistical Advice Needed for RNAseq Data Analysis
12 days ago by ATpoint 82k
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276
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
12 days ago by ATpoint 82k
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221
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Comment: Comment: Error in edgeR/Deseq2 Analysis
12 days ago by ATpoint 82k
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394
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Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
12 days ago by ATpoint 82k
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2
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323
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Answer: Answer: I'm new to cell ranger. Can single cells prepared with a protocol other than the
12 days ago by ATpoint 82k
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0
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390
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Comment: Comment: Deseq2 : Paired analysis or otherwise
13 days ago by ATpoint 82k
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1
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23k
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Comment: Comment: Gene Set Enrichment Analysis
14 days ago by ATpoint 82k
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390
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Answer: Answer: Deseq2 : Paired analysis or otherwise
15 days ago by ATpoint 82k
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325
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Comment: Comment: 10x GEX and ADT data analysis in Seurat
15 days ago by ATpoint 82k
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264
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Answer: Answer: How to handle more than 1 SRA Run per Experiment?
15 days ago by ATpoint 82k
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277
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Comment: Comment: DepMap: siRNA and CRSIPR discrepancy
17 days ago by ATpoint 82k
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326
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Comment: Comment: Questions about transfering wgs file to reference genome file
17 days ago by ATpoint 82k
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883
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Comment: Comment: RNAseq of primary tumor and metastases in two different organ
17 days ago by ATpoint 82k
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326
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Comment: Comment: Questions about transfering wgs file to reference genome file
17 days ago by ATpoint 82k
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0
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2.4k
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Comment: Comment: Shannon vs Simpson for TCR diversity estimation
17 days ago by ATpoint 82k
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325
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Comment: Comment: 10x GEX and ADT data analysis in Seurat
17 days ago by ATpoint 82k
1
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0
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174
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Answer: Answer: Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-
18 days ago by ATpoint 82k
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1.2k
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Comment: Comment: ¿How I know if it is a batch effect or are real differences between my controls
22 days ago by ATpoint 82k
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0
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387
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Comment: Comment: lncRNA from TCGA
22 days ago by ATpoint 82k
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1
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364
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Comment: Comment: WGCNA website
22 days ago by ATpoint 82k
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0
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223
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Comment: Comment: TMM normalization with DESeq2
26 days ago by ATpoint 82k
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1
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223
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Answer: Answer: TMM normalization with DESeq2
updated 26 days ago by 43k • written 26 days ago by 82k
9,669 results • Page 1 of 194
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