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Answer: Answer: ChIP-seq datasets: input samples omitted?
9 hours ago by ATpoint 82k
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Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
2 days ago by ATpoint 82k
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277
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Answer: Answer: Sequence read length shorter than flow cell specification
3 days ago by ATpoint 82k
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Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
6 days ago by ATpoint 82k
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323
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Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
6 days ago by ATpoint 82k
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280
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Answer: Answer: Per base sequence content error in RNAseq analysis
6 days ago by ATpoint 82k
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537
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Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
8 days ago by ATpoint 82k
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274
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Answer: Answer: DEseq2
10 days ago by ATpoint 82k
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377
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Answer: Answer: Which experiments generate Position Frequency Matrix?
12 days ago by ATpoint 82k
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395
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Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
12 days ago by ATpoint 82k
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323
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Answer: Answer: I'm new to cell ranger. Can single cells prepared with a protocol other than the
12 days ago by ATpoint 82k
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390
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Answer: Answer: Deseq2 : Paired analysis or otherwise
15 days ago by ATpoint 82k
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265
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Answer: Answer: How to handle more than 1 SRA Run per Experiment?
15 days ago by ATpoint 82k
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174
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Answer: Answer: Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-
18 days ago by ATpoint 82k
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223
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Answer: Answer: TMM normalization with DESeq2
updated 26 days ago by 43k • written 26 days ago by 82k
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182
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Answer: Answer: Can't download txdbmaker package
26 days ago by ATpoint 82k
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379
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Answer: Answer: Homer giving troubles
28 days ago by ATpoint 82k
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300
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Answer: Answer: Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Bi
29 days ago by ATpoint 82k
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266
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Answer: Answer: How to calculate depth of coverage and applying read depth filter
4 weeks ago by ATpoint 82k
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422
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Answer: Answer: Problem generating paired end reads when converting Cell Ranger's BAM result to
4 weeks ago by ATpoint 82k
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417
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Answer: Answer: Limma compare between 3 conditions vs 2 conditions
4 weeks ago by ATpoint 82k
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251
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Answer: Answer: Using velocyto on 3'UTR 10x single-cell RNA-Seq data
4 weeks ago by ATpoint 82k
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222
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Answer: Answer: Can I use this community for software development?
4 weeks ago by ATpoint 82k
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566
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Answer: Answer: calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
5 weeks ago by ATpoint 82k
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302
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Answer: Answer: How to visualize scRNA-seq normalized data
5 weeks ago by ATpoint 82k
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263
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Answer: Answer: Infering the cell composition from bulk RNA-seq data for mouse
5 weeks ago by ATpoint 82k
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239
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Answer: Answer: Gene set to perform GSVA
5 weeks ago by ATpoint 82k
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321
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Answer: Answer: Length by gene from salmon
5 weeks ago by ATpoint 82k
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392
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Answer: Answer: scRNAseq normalization
5 weeks ago by ATpoint 82k
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278
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Answer: Answer: Compute p-value, having log fold change
6 weeks ago by ATpoint 82k
2
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802
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Answer: Answer: t-test in two groups, multiple rows
6 weeks ago by ATpoint 82k
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385
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Answer: Answer: With DESeq2 "Not full rank" Error with design
6 weeks ago by ATpoint 82k
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237
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Answer: Answer: Seeking Advice on Pre-processing Single Cell Data for Gene Mapping
6 weeks ago by ATpoint 82k
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250
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Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
6 weeks ago by ATpoint 82k
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369
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Answer: Answer: Demonstrating lack of difference between two peaksets
6 weeks ago by ATpoint 82k
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233
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Answer: Answer: Having problems doing the Hisat2 alignment
7 weeks ago by ATpoint 82k
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365
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Answer: Answer: p-value on excel for different number of mutant samples vs WT samples
7 weeks ago by ATpoint 82k
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312
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Answer: Answer: Deal with the mapping problem for deviding bins
7 weeks ago by ATpoint 82k
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508
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Answer: Answer: Salmon
8 weeks ago by ATpoint 82k
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508
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Answer: Answer: minimap2 gets killed, but it doesn't explain why
8 weeks ago by ATpoint 82k
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353
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Answer: Answer: Choosing right GSEA background gene sets
8 weeks ago by ATpoint 82k
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269
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Answer: Answer: DESEQ2 Code
8 weeks ago by ATpoint 82k
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292
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Answer: Answer: A question about using HISAT2 without biological replicates
9 weeks ago by ATpoint 82k
3
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321
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Answer: Answer: samtools faidx not finding my modified sequence
9 weeks ago by ATpoint 82k
1
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222
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Answer: Answer: Extract single chromosome reads from Bam file
9 weeks ago by ATpoint 82k
2
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343
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Answer: Answer: model.matrix in EdgeR to account for batch effects with multiple samples
10 weeks ago by ATpoint 82k
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345
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Answer: Answer: Normalization of BIg wig file
10 weeks ago by ATpoint 82k
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391
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Answer: Answer: Difference in count values depends on tool and reference genome version
10 weeks ago by ATpoint 82k
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263
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Answer: Answer: Linux dependencies in Docker file
10 weeks ago by ATpoint 82k
2
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533
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Answer: Answer: How do I use md5sum to check if my .fastq files from SRA Explorer have been down
11 weeks ago by ATpoint 82k
2,308 results • Page 1 of 47
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