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Comment: C: Mapping reads to contigs with BBMap - output statistics question (metagenome)
4.7 years ago by colindaven 8.1k
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1.2k
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Answer: A: Experience with BaseRecalibratorSpark and ApplyBQSRSpark
4.8 years ago by colindaven 8.1k
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2.0k
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Comment: C: Merging PacBio and Nanopore reads
4.8 years ago by colindaven 8.1k
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1
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1.8k
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Answer: A: How to run nucmer without reference? (viruses metagenomics)
4.8 years ago by colindaven 8.1k
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2.2k
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Answer: A: Using GRch38 (human genome) primary assembly for mapping long reads
4.8 years ago by colindaven 8.1k
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1
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1.4k
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Comment: C: Filtering VCF by FilterVCF picard
4.8 years ago by colindaven 8.1k
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1.9k
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Comment: C: GMAP gff wrong direction of transcripts?
4.8 years ago by colindaven 8.1k
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883
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Answer: A: Deciding on the best read length for metagenomics
4.8 years ago by colindaven 8.1k
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1.2k
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Comment: C: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
4.8 years ago by colindaven 8.1k
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1.8k
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Comment: C: What is the best way to assemble Illumina paired end reads?
4.8 years ago by colindaven 8.1k
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1.7k
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Answer: A: Programmatically retrieving taxon classification
4.9 years ago by colindaven 8.1k
1
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1.2k
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Answer: A: filtering alignned seqeunces
4.9 years ago by colindaven 8.1k
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4.3k
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Answer: A: how to parse a .fasta file in python ?
4.9 years ago by colindaven 8.1k
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3.4k
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Comment: C: How to handle multiple contig outputs from de novo assemblers when one contig is
4.9 years ago by colindaven 8.1k
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930
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Answer: A: Find repeat regions on 100 eukaryotic assemblies
4.9 years ago by colindaven 8.1k
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7.5k
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Comment: C: Best open source genome browser in 2020
4.9 years ago by colindaven 8.1k
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1
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7.5k
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Answer: A: Best open source genome browser in 2020
4.9 years ago by colindaven 8.1k
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3.9k
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Comment: C: RIP CentOS, CentOS 8 to be EOL'd in 2021
4.9 years ago by colindaven 8.1k
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0
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918
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Comment: C: Searching subreads used to assemble contig of interest (canu)
4.9 years ago by colindaven 8.1k
1
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0
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898
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Answer: A: can i detect regulatory proteins with co-expression network?
4.9 years ago by colindaven 8.1k
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1
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6.2k
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Comment: C: filtering out nanopore reads by alignment score
5.0 years ago by colindaven 8.1k
2
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1
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3.5k
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Answer: A: Combining nanopore libraries
5.0 years ago by colindaven 8.1k
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1
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852
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Comment: C: confirm assembly in pan-genome analysis
5.0 years ago by colindaven 8.1k
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682
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Comment: C: Multispecies fastq file - identification of SNP
5.0 years ago by colindaven 8.1k
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792
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Answer: A: Blasting two databases
5.0 years ago by colindaven 8.1k
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944
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Job: Experienced specialist NGS scRNA-seq/RNA-seq at Hannover Medical School in Hannover, Germany
R RNA-Seq single-cell sequencing
updated 2.4 years ago by 45k • written 5.0 years ago by 8.1k
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1.6k
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Answer: A: Extract reads based on the orientation of the mapped reads.
5.0 years ago by colindaven 8.1k
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1.4k
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Comment: C: denovo assembly using soap denovo
5.0 years ago by colindaven 8.1k
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2
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1.2k
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Comment: C: bacterial genome assembly with nano pore sequence data
5.1 years ago by colindaven 8.1k
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1
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1.8k
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Comment: C: Suggestion for tools to data transfer
5.1 years ago by colindaven 8.1k
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0
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940
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Answer: A: Inside a .sam file, how do I know which read maps where to which scaffold in the
5.1 years ago by colindaven 8.1k
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0
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1.1k
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Answer: A: Aligning & Comparing References for SNPs / Indels
5.1 years ago by colindaven 8.1k
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1
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2.4k
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Comment: C: error: BAM to FASTQ
5.1 years ago by colindaven 8.1k
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0
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1.4k
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Comment: C: Having made a paired-end and stranded-forward sequencing (NGS) implies that I wi
5.1 years ago by colindaven 8.1k
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0
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2.4k
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Answer: A: Getting reference genome for vcf2maf tool
5.1 years ago by colindaven 8.1k
1
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0
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12k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
5.1 years ago by colindaven 8.1k
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0
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2.0k
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Answer: A: while running ONT(nanopore) bioinforamtics pipeline, fasta files are not generat
5.1 years ago by colindaven 8.1k
1
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4.0k
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Comment: C: Extend 3' UTR of a GTF file
5.1 years ago by colindaven 8.1k
2
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0
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3.4k
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Answer: A: E: Package 'tophat' has no installation candidate
5.1 years ago by colindaven 8.1k
1
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0
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1.3k
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Comment: C: NGS bam file reference-guided assembly
5.1 years ago by colindaven 8.1k
0
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1
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4.0k
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Comment: C: Extend 3' UTR of a GTF file
5.1 years ago by colindaven 8.1k
2
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0
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1.8k
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Answer: A: Looking for easy to use eukaryotic genome annotation pipeline?
5.1 years ago by colindaven 8.1k
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0
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3.1k
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Comment: C: Human transposable elements
5.1 years ago by colindaven 8.1k
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0
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2.5k
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Comment: C: GTF/GFF3 file compatible with (GRCh38/hg38)(hg38)
5.2 years ago by colindaven 8.1k
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1
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1.9k
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Answer: A: how Gap closer can fill gaps in scafolds
5.2 years ago by colindaven 8.1k
4
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0
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3.3k
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Answer: A: Racon polishing script that maps long reads and does racon polishing continuousl
5.2 years ago by colindaven 8.1k
2
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1
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4.1k
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Answer: A: Adapter trimming by Trimmomatic - Nextera Library
5.2 years ago by colindaven 8.1k
1
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1
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1.3k
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Answer: A: NGS bam file reference-guided assembly
5.2 years ago by colindaven 8.1k
0
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0
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3.1k
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Comment: C: How to download FASTA protein sequences for Escherichia coli strains from Ensemb
5.2 years ago by colindaven 8.1k
2
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2
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1.6k
views
Answer: A: Where to find paired solid tumor WES raw data (tumor/tumor margin) that I can do
5.2 years ago by colindaven 8.1k
1,118 results • Page 15 of 23
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