Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
1
reply
589
views
Answer: Answer: filter reads with >90% match
3 months ago by Pierre Lindenbaum 161k
0
votes
1
reply
945
views
Answer: Answer: How to save the results of norm to txt
3 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
935
views
Answer: Answer: nfcore/fetchngs : Error: fasterq-dump cannot create this file
3 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
246
views
Answer: Answer: Importing read pairs from BAM with specific R1 and R2 start/end positions for pa
3 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
525
views
Answer: Answer: How can we explain a lower reference allele frequency than alternative allele in
3 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
589
views
Answer: Answer: split sequences into their codons in a table
3 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
544
views
Answer: Answer: Find reference fasta based on M5/MD5 string
3 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
562
views
Answer: Answer: How to run BRIG on Ubuntu 22?
4 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
304
views
Answer: Answer: Is there a way to map Medgen # to OMIM # programmatically?
4 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
886
views
Answer: Answer: how to copy and rename files in nextflow
4 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
468
views
Answer: Answer: How to launch MAUVE on Ubuntu 22?
4 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
618
views
Answer: Answer: Help with vcf annotation
4 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
326
views
Answer: Answer: Efficiently Adding Missing 0/0 Sites to VCF from Whole-Genome Sequencing
4 months ago by Pierre Lindenbaum 161k
3
votes
0
replies
1.4k
views
Answer: Answer: BedGraph file
4 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
1.9k
views
Answer: Answer: Can anyone simplify GATK installation
4 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
450
views
Answer: Answer: Remove duplicate lines in a vcf file
updated 4 months ago by 142k • written 4 months ago by 161k
1
vote
2
replies
763
views
Answer: Answer: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
4 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
698
views
Answer: Answer: pVCF versus gVCF
4 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
749
views
Answer: Answer: Can I remove all variants in a vcf file that have 0/0 for PRS calculation?
4 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
1.0k
views
Answer: Answer: Where can I find a vcf file with individuals in it, that have a specific disease
4 months ago by Pierre Lindenbaum 161k
0
votes
1
reply
998
views
Answer: Answer: Error getting the genome on clinvaR
4 months ago by Pierre Lindenbaum 161k
3
votes
1
reply
516
views
Answer: Answer: Should I re-index a bam after editing the read groups in the bam header?
4 months ago by Pierre Lindenbaum 161k
2
votes
2
replies
747
views
Answer: Answer: CRAM file version
4 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
421
views
Answer: Answer: Annotate BED file
4 months ago by Pierre Lindenbaum 161k
0
votes
1
reply
1.2k
views
Answer: Answer: How to compare multiple bed files with a collection of these bed files one by on
updated 4 months ago by 43k • written 4 months ago by 161k
3
votes
0
replies
817
views
Answer: Answer: Diagram tool
4 months ago by Pierre Lindenbaum 161k
2
votes
2
replies
605
views
Answer: Answer: Importing modules based on python in bash script wont work
4 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
502
views
Answer: Answer: extract variants from 1000 Genome VCF files
5 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
463
views
Answer: Answer: How to subtract variants from one VCF file to another?
5 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
649
views
Answer: Answer: gatk SelectVariants is giving duplicate allele error while extracting SNPs out o
updated 5 months ago by 43k • written 5 months ago by 161k
3
votes
1
reply
1.8k
views
Answer: Answer: How to query 1000 genomes project VCF files for specific regions without downloa
5 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
502
views
Answer: Answer: Issues with Chromosome Encoding and VCF Annotation in dbSNP Alpha Release
5 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
1.5k
views
Answer: Answer: Extracting only soft/hard clipped reads from a bam file
5 months ago by Pierre Lindenbaum 161k
3
votes
1
reply
422
views
Answer: Answer: Moving AF tag to new column in a VCF file
5 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
342
views
Answer: Answer: Bedtools intersection
5 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
658
views
Answer: Answer: subset a bam file
5 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
661
views
Answer: Answer: Human mitochondrial reference genome
5 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
1.0k
views
Answer: Answer: How to filter .fasta file based on conditional statement
5 months ago by Pierre Lindenbaum 161k
5
votes
2
replies
479
views
Answer: Answer: BBDuk error: with these 4 lines....
5 months ago by Pierre Lindenbaum 161k
0
votes
1
reply
572
views
Answer: Answer: snp database using annotation
5 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
376
views
Answer: Answer: update FMT/GT in VCF file using bcftools annotate
5 months ago by Pierre Lindenbaum 161k
2
votes
0
replies
820
views
Answer: Answer: How to overlap patient VCF with ClinVar database annotation using bedtools?
5 months ago by Pierre Lindenbaum 161k
2
votes
2
replies
468
views
Answer: Answer: Circos karyotype file
5 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
266
views
Answer: Answer: Is there a way to query Ensembl to get all 3'UTRs from all species?
5 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
346
views
Answer: Answer: bcftools info and filter error
5 months ago by Pierre Lindenbaum 161k
1
vote
0
replies
1.3k
views
Answer: Answer: How to download FASTQ files from the European Nucleotide Archive (ENA) to use th
6 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
527
views
Answer: Answer: Compare two VCF / BAM / FASTQ files for degree of relativity
6 months ago by Pierre Lindenbaum 161k
2
votes
2
replies
752
views
Answer: Answer: Cut fastq files
6 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
445
views
Answer: Answer: set GT values to missing in VCF file for specific sample-variant combinations -
6 months ago by Pierre Lindenbaum 161k
1
vote
1
reply
621
views
Answer: Answer: [main_samview] fail to read the header from "human_g1k_v37.annotate.fasta".
6 months ago by Pierre Lindenbaum 161k
4,703 results • Page 3 of 95
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6