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2
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1
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3.3k
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Answer: Answer: Issues with newer Kallisto versions (aka 0.46.1)
3.4 years ago by dsull ★ 7.8k
1
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1
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1.3k
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Comment: Comment: Stranded or not stranded Fasq data
3.4 years ago by dsull ★ 7.8k
1
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1
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3.4k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
3.4 years ago by dsull ★ 7.8k
0
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2
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3.4k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
3.4 years ago by dsull ★ 7.8k
1
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1
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3.4k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
3.4 years ago by dsull ★ 7.8k
0
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0
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2.7k
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Comment: Comment: Is it possible to calculate TPM using 10X Genomics public data?
3.4 years ago by dsull ★ 7.8k
1
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1
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2.7k
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Comment: Comment: Is it possible to calculate TPM using 10X Genomics public data?
3.4 years ago by dsull ★ 7.8k
1
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0
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1.3k
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Comment: Comment: How to filter .fa file by gene_biotype
3.5 years ago by dsull ★ 7.8k
1
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0
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1.8k
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Comment: Comment: Help with kallisto-bustools: how to interpret the inspect.json output file
3.5 years ago by dsull ★ 7.8k
0
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0
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3.2k
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Comment: Comment: Kallisto and Salmon give different results
3.5 years ago by dsull ★ 7.8k
0
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0
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3.2k
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Comment: Comment: Kallisto and Salmon give different results
3.5 years ago by dsull ★ 7.8k
1
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0
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5.4k
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Comment: Comment: Why NB distribution is preferred in RNA-Seq while normal distribution is preferr
3.5 years ago by dsull ★ 7.8k
0
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0
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1.5k
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Comment: Comment: Differential expression analysis using Lung cancer CPTAC RNA SEQ Data
3.5 years ago by dsull ★ 7.8k
0
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1
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1.5k
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Comment: Comment: Differential expression analysis using Lung cancer CPTAC RNA SEQ Data
3.5 years ago by dsull ★ 7.8k
0
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0
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2.5k
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Answer: Answer: Trimming adaptors and primers for RNAseq reads
3.5 years ago by dsull ★ 7.8k
0
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0
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1.6k
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Comment: Comment: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
3.5 years ago by dsull ★ 7.8k
1
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1
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1.6k
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Answer: Answer: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
3.5 years ago by dsull ★ 7.8k
2
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0
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3.1k
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Answer: Answer: How does Salmon bootstrapping work?
3.5 years ago by dsull ★ 7.8k
3
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0
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2.0k
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Comment: Comment: RPKM genelength
3.5 years ago by dsull ★ 7.8k
1
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1
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2.0k
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Comment: Comment: RPKM genelength
3.5 years ago by dsull ★ 7.8k
2
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0
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2.0k
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Comment: Comment: RPKM genelength
3.5 years ago by dsull ★ 7.8k
3
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1
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868
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Comment: Comment: problem in finding differentially expressed genes
3.5 years ago by dsull ★ 7.8k
0
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0
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1.3k
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Comment: Comment: How to read fastqs from different sequencing runs rather than merging?
3.5 years ago by dsull ★ 7.8k
1
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0
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2.9k
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Comment: Comment: Volcano plot with aggregated p values from Sleuth
3.5 years ago by dsull ★ 7.8k
1
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1
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2.9k
views
Comment: Comment: Volcano plot with aggregated p values from Sleuth
3.5 years ago by dsull ★ 7.8k
2
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0
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1.6k
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Comment: Comment: Can I use the transcripts_to_genes.txt file from kallisto for bulk RNA seq data?
updated 3.5 years ago by 45k • written 3.5 years ago by ★ 7.8k
0
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0
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5.3k
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Comment: Comment: kallisto "gene" counts
3.6 years ago by dsull ★ 7.8k
0
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1
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5.3k
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Comment: Comment: kallisto "gene" counts
3.6 years ago by dsull ★ 7.8k
2
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0
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5.3k
views
Comment: Comment: kallisto "gene" counts
3.6 years ago by dsull ★ 7.8k
3
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1
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5.3k
views
Answer: Answer: kallisto "gene" counts
3.6 years ago by dsull ★ 7.8k
2
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1
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1.4k
views
Comment: Comment: A general question about bash command
3.6 years ago by dsull ★ 7.8k
2
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1
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2.9k
views
Answer: Answer: Volcano plot with aggregated p values from Sleuth
3.6 years ago by dsull ★ 7.8k
2
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1
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1.1k
views
Comment: Comment: Ways or packages to analyze single-cell RNAseq data that prepared following Tang
3.6 years ago by dsull ★ 7.8k
0
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0
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2.7k
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Comment: Comment: Best transcriptome assembler
3.6 years ago by dsull ★ 7.8k
2
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1
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2.7k
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Comment: Comment: Best transcriptome assembler
3.6 years ago by dsull ★ 7.8k
0
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1
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2.7k
views
Answer: Answer: Best transcriptome assembler
3.6 years ago by dsull ★ 7.8k
1
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1
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1.4k
views
Comment: Comment: Is Tophat 2 good?
3.6 years ago by dsull ★ 7.8k
0
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1
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1.0k
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Answer: Answer: RNAseq data DEG analysis - DESeq2 normalized data
3.6 years ago by dsull ★ 7.8k
0
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1
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1.6k
views
Answer: Answer: A Question About Installing sleuth (in R) of kallisto-sleuth
3.6 years ago by dsull ★ 7.8k
0
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0
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1.8k
views
Comment: Comment: cufflinks FPKM values
3.6 years ago by dsull ★ 7.8k
0
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1
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1.8k
views
Comment: Comment: cufflinks FPKM values
3.6 years ago by dsull ★ 7.8k
3
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1
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7.4k
views
Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
3.6 years ago by dsull ★ 7.8k
0
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1
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2.4k
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Comment: Comment: Why do UMAP on all scRNA-seq samples rather than a UMAP for each treatment?
3.7 years ago by dsull ★ 7.8k
0
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1
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1.1k
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Comment: Comment: Creating gene counts for differential gene expression analysis
3.7 years ago by dsull ★ 7.8k
2
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0
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1.6k
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Answer: Answer: SMARTseq2 scRNAseq and gene length normalization
3.7 years ago by dsull ★ 7.8k
4
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4
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2.5k
views
understanding how cutadapt trims
cutadapt
updated 3.7 years ago by 21k • written 3.7 years ago by ★ 7.8k
0
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1
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1.4k
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Comment: Comment: RNA-seq GSEA
3.7 years ago by dsull ★ 7.8k
3
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1
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4.2k
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Comment: Comment: RNA velocity for smart-seq2 dataset
3.7 years ago by dsull ★ 7.8k
0
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0
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3.7k
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Comment: Comment: FPKM to raw count conversion
3.7 years ago by dsull ★ 7.8k
3
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1
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2.3k
views
Comment: Comment: Which one? Log2foldchange or t statistic
3.8 years ago by dsull ★ 7.8k
804 results • Page 11 of 17
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