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Answer: Answer: To get p-values for the TPM
1 day ago by dsull ★ 5.8k
2
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1
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409
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
3 days ago by dsull ★ 5.8k
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0
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315
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Answer: Answer: How to establish haplotype-specific gene expression levels
3 days ago by dsull ★ 5.8k
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1
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509
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
15 days ago by dsull ★ 5.8k
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1
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365
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Answer: Answer: DESeq2 and normalization
29 days ago by dsull ★ 5.8k
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1
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705
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.8k
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1
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228
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Answer: Answer: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.8k
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0
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378
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Answer: Answer: scRNAseq normalization
5 weeks ago by dsull ★ 5.8k
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0
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156
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Answer: Answer: STAR --sjdbGTFfile in alignment step
6 weeks ago by dsull ★ 5.8k
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1
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284
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
7 weeks ago by dsull ★ 5.8k
4
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1
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355
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.8k
3
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0
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549
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
9 weeks ago by dsull ★ 5.8k
0
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0
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575
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 5.8k
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0
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250
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Answer: Answer: Using tophat2 output for kallisto
9 weeks ago by dsull ★ 5.8k
2
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1
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369
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Answer: Answer: bulk seq vs. sc-seq
11 weeks ago by dsull ★ 5.8k
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1
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551
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Answer: Answer: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.8k
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0
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373
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Answer: Answer: How to do DESeq2 on Kallisto Data
11 weeks ago by dsull ★ 5.8k
3
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1
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605
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
12 weeks ago by dsull ★ 5.8k
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1
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1.0k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify it.
3 months ago by dsull ★ 5.8k
3
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1
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318
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Answer: Answer: Using Expression of a Gene as a Linear Regression Variable
3 months ago by dsull ★ 5.8k
2
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1
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355
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Answer: Answer: STAR index generation killed after "inserting junctions into the genome indices"
updated 3 months ago by 82k • written 3 months ago by ★ 5.8k
1
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1
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549
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Answer: Answer: Kallisto-Bustools Output prpblems
4 months ago by dsull ★ 5.8k
2
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1
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557
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Answer: Answer: Kallisto-bustools output to Seurat Object
4 months ago by dsull ★ 5.8k
0
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1
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763
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Answer: Answer: bwa-mem reproducibility
4 months ago by dsull ★ 5.8k
3
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1
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1.1k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
4 months ago by dsull ★ 5.8k
1
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1
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582
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Answer: Answer: Should SMART-seq2 data be deduplicated in STAR?
5 months ago by dsull ★ 5.8k
0
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1
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614
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Answer: Answer: Three questions about datasets
5 months ago by dsull ★ 5.8k
2
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1
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641
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Answer: Answer: Smart seq3 analysis
5 months ago by dsull ★ 5.8k
2
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0
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569
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Answer: Answer: salmon for gene expression quantification
5 months ago by dsull ★ 5.8k
1
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1
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671
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Answer: Answer: Quality filtering prior to pseudoalignment
5 months ago by dsull ★ 5.8k
3
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1
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667
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Answer: Answer: Why am I getting different results with kallisto?
5 months ago by dsull ★ 5.8k
1
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0
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312
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Answer: Answer: Intenger encoding versus one-hot encoding for chromosome as a predictor in a neu
6 months ago by dsull ★ 5.8k
1
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1
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1.0k
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Answer: Answer: Best command line tool for downloading sequencing reads
6 months ago by dsull ★ 5.8k
0
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1
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480
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Answer: Answer: GSEA analysis for phosphoproteins
6 months ago by dsull ★ 5.8k
1
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1
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677
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Answer: Answer: How to assign gene names after kallisto when I add GFP?
6 months ago by dsull ★ 5.8k
1
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0
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1.8k
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Answer: Answer: Unmapped Reads in Kallisto
6 months ago by dsull ★ 5.8k
0
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1
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1.1k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
7 months ago by dsull ★ 5.8k
0
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0
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1.4k
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Answer: Answer: Is Bioinformatics a Professional Degree?
7 months ago by dsull ★ 5.8k
2
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1
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464
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Answer: Answer: Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
8 months ago by dsull ★ 5.8k
0
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1
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532
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Answer: Answer: Extracting RNA sequence - single cell
8 months ago by dsull ★ 5.8k
1
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1
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894
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Answer: Answer: Problem creating salmon index
9 months ago by dsull ★ 5.8k
1
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2
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729
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Answer: Answer: Where can I find the --chromosomes file for kallisto?
9 months ago by dsull ★ 5.8k
1
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1
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690
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Answer: Answer: MAGeCK MLE's sgRNA efficacies always end up at 1.0
9 months ago by dsull ★ 5.8k
1
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1
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1.7k
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Answer: Answer: Threshold for a value of RPKM considered significant
10 months ago by dsull ★ 5.8k
2
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1
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600
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Answer: Answer: How to convert Kallisto output to Salmon?
10 months ago by dsull ★ 5.8k
1
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1
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1.6k
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Answer: Answer: bar chart to show a p value of 0
10 months ago by dsull ★ 5.8k
2
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2
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1.6k
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Answer: Answer: No expression found with Salmon and Kallisto
10 months ago by dsull ★ 5.8k
0
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0
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411
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Answer: Answer: Appropriate RPKM cutoff
10 months ago by dsull ★ 5.8k
0
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0
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707
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Answer: Answer: How to generate cDNA file from genome FASTA and GTF?
11 months ago by dsull ★ 5.8k
2
votes
2
replies
1.1k
views
Answer: Answer: Genes' fpkm values through cufflink
11 months ago by dsull ★ 5.8k
186 results • Page 1 of 4
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