Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
2
votes
1
reply
133
views
Answer: Answer: Pre-Made STAR Index for mm10 Mouse Genome
8 hours ago by dsull ★ 7.4k
4
votes
1
reply
359
views
Answer: Answer: STAR vs. Kallisto
12 hours ago by dsull ★ 7.4k
0
votes
1
reply
317
views
Answer: Answer: Single Nuclei RNA-Sequencing Analysis Without CellRanger
15 days ago by dsull ★ 7.4k
1
vote
0
replies
431
views
Answer: Answer: Parsing BAM file per cell from Smart-Seq2 dataset
5 weeks ago by dsull ★ 7.4k
0
votes
0
replies
362
views
Answer: Answer: Salmon RNA-Seq transcript quantification
6 weeks ago by dsull ★ 7.4k
2
votes
1
reply
815
views
Answer: Answer: What is the current state of the beef against UMAP/tSNE in the context of sc tra
8 weeks ago by dsull ★ 7.4k
1
vote
1
reply
851
views
Answer: Answer: Manual conversion of VCF genotypes to nucleotide sequence
8 weeks ago by dsull ★ 7.4k
2
votes
1
reply
511
views
Answer: Answer: How to handle paired and unpaired reads in RNAseq pipeline
11 weeks ago by dsull ★ 7.4k
0
votes
1
reply
1.0k
views
Answer: Answer: Preparation needed to get into Bioinformatic field
11 weeks ago by dsull ★ 7.4k
3
votes
2
replies
875
views
Answer: Answer: How well was the rRNA depletion for RNA-Seq experiments
12 weeks ago by dsull ★ 7.4k
1
vote
2
replies
598
views
Answer: Answer: How to do allele specific expression analysis (ASE)
3 months ago by dsull ★ 7.4k
3
votes
0
replies
957
views
Answer: Answer: Premade RNA-seq pipeline or custom
3 months ago by dsull ★ 7.4k
1
vote
0
replies
642
views
Answer: Answer: rRNA contamination in RNASeq fdata
4 months ago by dsull ★ 7.4k
2
votes
0
replies
547
views
Answer: Answer: STARsolo sorted bam contains 'non-whitelisted' barcodes
4 months ago by dsull ★ 7.4k
1
vote
0
replies
365
views
Answer: Answer: No change in quality score graph even after adapter removal
4 months ago by dsull ★ 7.4k
0
votes
0
replies
527
views
Answer: Answer: Spatial correlation between two continuous variables
4 months ago by dsull ★ 7.4k
3
votes
1
reply
987
views
Answer: Answer: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
4 months ago by dsull ★ 7.4k
0
votes
0
replies
733
views
Answer: Answer: PossionDis method for identification of differentially expressed genes.
4 months ago by dsull ★ 7.4k
3
votes
2
replies
1.0k
views
Answer: Answer: How to handle RNA seq data with unbalanced % rRNA by group?
6 months ago by dsull ★ 7.4k
2
votes
0
replies
523
views
Answer: Answer: How far pangenome from being the mainstream?
7 months ago by dsull ★ 7.4k
1
vote
1
reply
1.3k
views
Answer: Answer: Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
7 months ago by dsull ★ 7.4k
0
votes
1
reply
1.1k
views
Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
7 months ago by dsull ★ 7.4k
1
vote
1
reply
673
views
Answer: Answer: Unaligned rRNA in RNAseq in balb/cj mouse
7 months ago by dsull ★ 7.4k
3
votes
1
reply
1.4k
views
Answer: Answer: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
7 months ago by dsull ★ 7.4k
1
vote
1
reply
821
views
Answer: Answer: Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
8 months ago by dsull ★ 7.4k
2
votes
1
reply
812
views
Answer: Answer: DNA SPRITE Expirment Benchmark
8 months ago by dsull ★ 7.4k
0
votes
0
replies
461
views
Answer: Answer: unmapped reads Kallisto bulk RNA-seq
8 months ago by dsull ★ 7.4k
2
votes
0
replies
533
views
Answer: Answer: extracting cell specific reads from cellranger BAM output file
8 months ago by dsull ★ 7.4k
0
votes
0
replies
707
views
Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
9 months ago by dsull ★ 7.4k
5
votes
1
reply
2.3k
views
Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
9 months ago by dsull ★ 7.4k
0
votes
0
replies
548
views
Answer: Answer: Fragment size of published single end RNAseq data
9 months ago by dsull ★ 7.4k
2
votes
1
reply
526
views
Answer: Answer: kb count -x parameter - what are the three parts?
9 months ago by dsull ★ 7.4k
2
votes
0
replies
448
views
Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
9 months ago by dsull ★ 7.4k
2
votes
1
reply
694
views
Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
9 months ago by dsull ★ 7.4k
1
vote
2
replies
2.6k
views
Answer: Answer: RNA STAR and trimming
9 months ago by dsull ★ 7.4k
0
votes
0
replies
1.8k
views
Answer: Answer: Conversion of Gene Name to Ensembl ID
9 months ago by dsull ★ 7.4k
0
votes
1
reply
1.1k
views
Answer: Answer: DESeq2 for DE analysis of proteins
9 months ago by dsull ★ 7.4k
2
votes
1
reply
760
views
Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
9 months ago by dsull ★ 7.4k
0
votes
1
reply
729
views
Answer: Answer: indexing the drosophila genome for kallisto
9 months ago by dsull ★ 7.4k
1
vote
0
replies
676
views
Answer: Answer: STAR Index error
9 months ago by dsull ★ 7.4k
4
votes
2
replies
1.1k
views
Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
10 months ago by dsull ★ 7.4k
0
votes
0
replies
573
views
Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
10 months ago by dsull ★ 7.4k
1
vote
1
reply
1.0k
views
Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
11 months ago by dsull ★ 7.4k
1
vote
1
reply
667
views
Answer: Answer: RNA-seq data for deep learning classification
11 months ago by dsull ★ 7.4k
1
vote
1
reply
1.6k
views
Answer: Answer: How should I make kallisto indexes?
12 months ago by dsull ★ 7.4k
1
vote
1
reply
2.9k
views
Answer: Answer: High Malat-1 expression in single cell data
12 months ago by dsull ★ 7.4k
0
votes
0
replies
1.6k
views
Answer: Answer: What does it mean single base resolution in sequencing?
12 months ago by dsull ★ 7.4k
1
vote
1
reply
1.7k
views
Answer: Answer: Heatmap and rna-seq
12 months ago by dsull ★ 7.4k
2
votes
1
reply
1.0k
views
Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
12 months ago by dsull ★ 7.4k
1
vote
2
replies
1.3k
views
Answer: Answer: To get p-values for the TPM
12 months ago by dsull ★ 7.4k
235 results • Page 1 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6