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answers
1
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197
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Answer:
Answer: Multiple samples and species with kallisto bus(tools)
2 days ago by
dsull
★ 4.0k
1
vote
1
reply
402
views
Answer:
Answer: STARsolo
8 days ago by
dsull
★ 4.0k
1
vote
1
reply
287
views
Answer:
Answer: kallisto -s o error
15 days ago by
dsull
★ 4.0k
1
vote
0
replies
183
views
Answer:
Answer: Do indexes made with cDNA fasta file contain only mRNAs?
17 days ago by
dsull
★ 4.0k
6
votes
1
reply
306
views
Answer:
Answer: Question about aggregating p values from different DE analysis methods for the s
17 days ago by
dsull
★ 4.0k
1
vote
2
replies
1.1k
views
Answer:
Answer: How do one analyze data from SMART-Seq stranded kit (v4)?
23 days ago by
dsull
★ 4.0k
1
vote
1
reply
345
views
Answer:
Answer: Tools/pipeline for analysis of smart-seq3 data
8 weeks ago by
dsull
★ 4.0k
1
vote
0
replies
367
views
Answer:
Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
8 weeks ago by
dsull
★ 4.0k
1
vote
1
reply
602
views
Answer:
Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
9 weeks ago by
dsull
★ 4.0k
2
votes
0
replies
380
views
Answer:
Answer: Circular deBuijn Graph
11 weeks ago by
dsull
★ 4.0k
1
vote
0
replies
804
views
Answer:
Answer: How to get transcriptome reference?
12 weeks ago by
dsull
★ 4.0k
2
votes
1
reply
489
views
Answer:
Answer: Does the bootstrap in kallisto affect the BAM files?
3 months ago by
dsull
★ 4.0k
1
vote
1
reply
758
views
Answer:
Answer: Issues with chromosome file in kallisto
3 months ago by
dsull
★ 4.0k
2
votes
1
reply
392
views
Answer:
Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
3 months ago by
dsull
★ 4.0k
2
votes
1
reply
274
views
Answer:
Answer: How to use Sleuth for Kallisto results in one directory?
3 months ago by
dsull
★ 4.0k
2
votes
1
reply
731
views
Answer:
Answer: Building index with kallisto, keeps getting killed.
3 months ago by
dsull
★ 4.0k
1
vote
1
reply
627
views
Answer:
Answer: FPKM file differentilly gene anaylsis
3 months ago by
dsull
★ 4.0k
2
votes
1
reply
393
views
Answer:
Answer: Random forest with DE genes
3 months ago by
dsull
★ 4.0k
2
votes
0
replies
255
views
Answer:
Answer: Understanding how-are-we-stranded-here and salmon parameters
3 months ago by
dsull
★ 4.0k
1
vote
1
reply
554
views
Answer:
Answer: Kallisto on identical transcript
5 months ago by
dsull
★ 4.0k
2
votes
1
reply
733
views
Answer:
Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
6 months ago by
dsull
★ 4.0k
2
votes
0
replies
470
views
Answer:
Answer: Reference that justifies/explains an FPKM cutoff
6 months ago by
dsull
★ 4.0k
1
vote
1
reply
975
views
Answer:
Answer: How to interpret a tSNE or UMAP plot to get biological conclusions ?
7 months ago by
dsull
★ 4.0k
3
votes
0
replies
327
views
Answer:
Answer: What are the advantages of GO and KEGG? What should be as next step?
7 months ago by
dsull
★ 4.0k
1
vote
1
reply
1.1k
views
Answer:
Answer: How to use kallisto correctly?
8 months ago by
dsull
★ 4.0k
1
vote
0
replies
586
views
Answer:
Answer: Top/best RNAseq workflow including anlaysis results for function annotation
8 months ago by
dsull
★ 4.0k
0
votes
0
replies
421
views
Answer:
Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
8 months ago by
dsull
★ 4.0k
2
votes
1
reply
748
views
Answer:
Answer: Issues with newer Kallisto versions (aka 0.46.1)
9 months ago by
dsull
★ 4.0k
0
votes
0
replies
680
views
Answer:
Answer: Trimming adaptors and primers for RNAseq reads
10 months ago by
dsull
★ 4.0k
1
vote
1
reply
509
views
Answer:
Answer: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
10 months ago by
dsull
★ 4.0k
1
vote
0
replies
871
views
Answer:
Answer: How does Salmon bootstrapping work?
10 months ago by
dsull
★ 4.0k
3
votes
1
reply
1.4k
views
Answer:
Answer: kallisto "gene" counts
11 months ago by
dsull
★ 4.0k
2
votes
1
reply
1.0k
views
Answer:
Answer: Volcano plot with aggregated p values from Sleuth
11 months ago by
dsull
★ 4.0k
0
votes
1
reply
724
views
Answer:
Answer: Best transcriptome assembler
11 months ago by
dsull
★ 4.0k
0
votes
1
reply
411
views
Answer:
Answer: RNAseq data DEG analysis - DESeq2 normalized data
11 months ago by
dsull
★ 4.0k
0
votes
1
reply
696
views
Answer:
Answer: A Question About Installing sleuth (in R) of kallisto-sleuth
11 months ago by
dsull
★ 4.0k
3
votes
1
reply
3.5k
views
Answer:
Answer: Methodological problems are extremely common for enrichment analysis - beware th
12 months ago by
dsull
★ 4.0k
2
votes
0
replies
492
views
Answer:
Answer: SMARTseq2 scRNAseq and gene length normalization
12 months ago by
dsull
★ 4.0k
1
vote
1
reply
983
views
Answer:
Answer: RNA velocity similar mtx for spliced and unspliced region (dropseq)
14 months ago by
dsull
★ 4.0k
1
vote
1
reply
452
views
Answer:
Answer: Prior to alignment of RNA-seq data
14 months ago by
dsull
★ 4.0k
2
votes
1
reply
1.1k
views
Answer:
Answer: Why does TCGA RNA-seq pipeline starts from a BAM file?
14 months ago by
dsull
★ 4.0k
1
vote
0
replies
410
views
Answer:
Answer: Quantifying expression levels of IsoSeq reads with Kallisto
14 months ago by
dsull
★ 4.0k
3
votes
0
replies
479
views
Answer:
Answer: Deseq2
14 months ago by
dsull
★ 4.0k
2
votes
1
reply
347
views
Answer:
Answer: Is there any way to make p-value high if correlation has negative value?
15 months ago by
dsull
★ 4.0k
1
vote
1
reply
758
views
Answer:
Answer: EM algorithm in Kallisto
18 months ago by
dsull
★ 4.0k
1
vote
0
replies
828
views
Answer:
Answer: Download TCGA and GTEX data from Xena toilHub for (full genome but for 1 cancer
18 months ago by
dsull
★ 4.0k
9
votes
1
reply
3.7k
views
Answer:
Answer: Differences between SMART-seq2, SMART-seq3, and 10x
18 months ago by
dsull
★ 4.0k
3
votes
1
reply
1.3k
views
Answer:
Answer: Analysis of shRNA/CRISPR screens in 2021
20 months ago by
dsull
★ 4.0k
1
vote
1
reply
1.9k
views
Answer:
Answer: understanding log2fold change of 0.31 and -0.25
20 months ago by
dsull
★ 4.0k
1
vote
0
replies
368
views
Answer:
Answer: Ways to mapping a transcriptome against a single gene
21 months ago by
dsull
★ 4.0k
134 results • Page
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