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Answer: Answer: Multiple samples and species with kallisto bus(tools)
2 days ago by dsull ★ 4.0k
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402
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Answer: Answer: STARsolo
8 days ago by dsull ★ 4.0k
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287
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Answer: Answer: kallisto -s o error
15 days ago by dsull ★ 4.0k
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183
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Answer: Answer: Do indexes made with cDNA fasta file contain only mRNAs?
17 days ago by dsull ★ 4.0k
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306
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Answer: Answer: Question about aggregating p values from different DE analysis methods for the s
17 days ago by dsull ★ 4.0k
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2
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1.1k
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Answer: Answer: How do one analyze data from SMART-Seq stranded kit (v4)?
23 days ago by dsull ★ 4.0k
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345
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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
8 weeks ago by dsull ★ 4.0k
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0
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367
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
8 weeks ago by dsull ★ 4.0k
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602
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
9 weeks ago by dsull ★ 4.0k
2
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0
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380
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Answer: Answer: Circular deBuijn Graph
11 weeks ago by dsull ★ 4.0k
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0
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804
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Answer: Answer: How to get transcriptome reference?
12 weeks ago by dsull ★ 4.0k
2
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489
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
3 months ago by dsull ★ 4.0k
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758
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Answer: Answer: Issues with chromosome file in kallisto
3 months ago by dsull ★ 4.0k
2
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1
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392
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
3 months ago by dsull ★ 4.0k
2
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1
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274
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
3 months ago by dsull ★ 4.0k
2
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1
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731
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Answer: Answer: Building index with kallisto, keeps getting killed.
3 months ago by dsull ★ 4.0k
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1
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627
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Answer: Answer: FPKM file differentilly gene anaylsis
3 months ago by dsull ★ 4.0k
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1
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393
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Answer: Answer: Random forest with DE genes
3 months ago by dsull ★ 4.0k
2
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0
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255
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
3 months ago by dsull ★ 4.0k
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1
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554
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Answer: Answer: Kallisto on identical transcript
5 months ago by dsull ★ 4.0k
2
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1
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733
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
6 months ago by dsull ★ 4.0k
2
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0
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470
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Answer: Answer: Reference that justifies/explains an FPKM cutoff
6 months ago by dsull ★ 4.0k
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1
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975
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Answer: Answer: How to interpret a tSNE or UMAP plot to get biological conclusions ?
7 months ago by dsull ★ 4.0k
3
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327
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Answer: Answer: What are the advantages of GO and KEGG? What should be as next step?
7 months ago by dsull ★ 4.0k
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1.1k
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Answer: Answer: How to use kallisto correctly?
8 months ago by dsull ★ 4.0k
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586
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Answer: Answer: Top/best RNAseq workflow including anlaysis results for function annotation
8 months ago by dsull ★ 4.0k
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0
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421
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Answer: Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
8 months ago by dsull ★ 4.0k
2
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1
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748
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Answer: Answer: Issues with newer Kallisto versions (aka 0.46.1)
9 months ago by dsull ★ 4.0k
0
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0
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680
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Answer: Answer: Trimming adaptors and primers for RNAseq reads
10 months ago by dsull ★ 4.0k
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1
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509
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Answer: Answer: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
10 months ago by dsull ★ 4.0k
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0
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871
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Answer: Answer: How does Salmon bootstrapping work?
10 months ago by dsull ★ 4.0k
3
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1
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1.4k
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Answer: Answer: kallisto "gene" counts
11 months ago by dsull ★ 4.0k
2
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1
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1.0k
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Answer: Answer: Volcano plot with aggregated p values from Sleuth
11 months ago by dsull ★ 4.0k
0
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1
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724
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Answer: Answer: Best transcriptome assembler
11 months ago by dsull ★ 4.0k
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1
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411
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Answer: Answer: RNAseq data DEG analysis - DESeq2 normalized data
11 months ago by dsull ★ 4.0k
0
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1
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696
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Answer: Answer: A Question About Installing sleuth (in R) of kallisto-sleuth
11 months ago by dsull ★ 4.0k
3
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1
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3.5k
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Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
12 months ago by dsull ★ 4.0k
2
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0
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492
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Answer: Answer: SMARTseq2 scRNAseq and gene length normalization
12 months ago by dsull ★ 4.0k
1
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1
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983
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Answer: Answer: RNA velocity similar mtx for spliced and unspliced region (dropseq)
14 months ago by dsull ★ 4.0k
1
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1
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452
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Answer: Answer: Prior to alignment of RNA-seq data
14 months ago by dsull ★ 4.0k
2
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1
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1.1k
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Answer: Answer: Why does TCGA RNA-seq pipeline starts from a BAM file?
14 months ago by dsull ★ 4.0k
1
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0
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410
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Answer: Answer: Quantifying expression levels of IsoSeq reads with Kallisto
14 months ago by dsull ★ 4.0k
3
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0
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479
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Answer: Answer: Deseq2
14 months ago by dsull ★ 4.0k
2
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1
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347
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Answer: Answer: Is there any way to make p-value high if correlation has negative value?
15 months ago by dsull ★ 4.0k
1
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1
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758
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Answer: Answer: EM algorithm in Kallisto
18 months ago by dsull ★ 4.0k
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0
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828
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Answer: Answer: Download TCGA and GTEX data from Xena toilHub for (full genome but for 1 cancer
18 months ago by dsull ★ 4.0k
9
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1
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3.7k
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Answer: Answer: Differences between SMART-seq2, SMART-seq3, and 10x
18 months ago by dsull ★ 4.0k
3
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1
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1.3k
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Answer: Answer: Analysis of shRNA/CRISPR screens in 2021
20 months ago by dsull ★ 4.0k
1
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1
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1.9k
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
20 months ago by dsull ★ 4.0k
1
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0
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368
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Answer: Answer: Ways to mapping a transcriptome against a single gene
21 months ago by dsull ★ 4.0k
134 results • Page 1 of 3
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