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Answer: Answer: How to do allele specific expression analysis (ASE)
2 days ago by dsull ★ 7.2k
3
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0
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616
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Answer: Answer: Premade RNA-seq pipeline or custom
18 days ago by dsull ★ 7.2k
1
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0
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547
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Answer: Answer: rRNA contamination in RNASeq fdata
4 weeks ago by dsull ★ 7.2k
2
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0
replies
441
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Answer: Answer: STARsolo sorted bam contains 'non-whitelisted' barcodes
5 weeks ago by dsull ★ 7.2k
1
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0
replies
242
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Answer: Answer: No change in quality score graph even after adapter removal
6 weeks ago by dsull ★ 7.2k
0
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0
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388
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Answer: Answer: Spatial correlation between two continuous variables
7 weeks ago by dsull ★ 7.2k
3
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1
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622
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Answer: Answer: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
7 weeks ago by dsull ★ 7.2k
0
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0
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458
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Answer: Answer: PossionDis method for identification of differentially expressed genes.
8 weeks ago by dsull ★ 7.2k
3
votes
2
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791
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Answer: Answer: How to handle RNA seq data with unbalanced % rRNA by group?
3 months ago by dsull ★ 7.2k
2
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0
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429
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Answer: Answer: How far pangenome from being the mainstream?
4 months ago by dsull ★ 7.2k
1
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1
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892
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Answer: Answer: Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
4 months ago by dsull ★ 7.2k
0
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1
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773
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Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
4 months ago by dsull ★ 7.2k
1
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1
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514
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Answer: Answer: Unaligned rRNA in RNAseq in balb/cj mouse
4 months ago by dsull ★ 7.2k
3
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1
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1.1k
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Answer: Answer: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
4 months ago by dsull ★ 7.2k
1
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1
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600
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Answer: Answer: Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
5 months ago by dsull ★ 7.2k
2
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1
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611
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Answer: Answer: DNA SPRITE Expirment Benchmark
5 months ago by dsull ★ 7.2k
0
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0
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373
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Answer: Answer: unmapped reads Kallisto bulk RNA-seq
5 months ago by dsull ★ 7.2k
2
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0
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390
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Answer: Answer: extracting cell specific reads from cellranger BAM output file
5 months ago by dsull ★ 7.2k
0
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0
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548
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Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
6 months ago by dsull ★ 7.2k
5
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1
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1.5k
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Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
6 months ago by dsull ★ 7.2k
0
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0
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419
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Answer: Answer: Fragment size of published single end RNAseq data
6 months ago by dsull ★ 7.2k
2
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1
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385
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Answer: Answer: kb count -x parameter - what are the three parts?
6 months ago by dsull ★ 7.2k
2
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0
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377
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Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
6 months ago by dsull ★ 7.2k
2
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1
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556
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Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
6 months ago by dsull ★ 7.2k
1
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2
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1.8k
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Answer: Answer: RNA STAR and trimming
6 months ago by dsull ★ 7.2k
0
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0
replies
1.2k
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Answer: Answer: Conversion of Gene Name to Ensembl ID
6 months ago by dsull ★ 7.2k
0
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1
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842
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Answer: Answer: DESeq2 for DE analysis of proteins
6 months ago by dsull ★ 7.2k
2
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1
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621
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Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
6 months ago by dsull ★ 7.2k
0
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1
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584
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Answer: Answer: indexing the drosophila genome for kallisto
6 months ago by dsull ★ 7.2k
1
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0
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494
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Answer: Answer: STAR Index error
6 months ago by dsull ★ 7.2k
4
votes
2
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829
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Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
7 months ago by dsull ★ 7.2k
0
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0
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452
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Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
7 months ago by dsull ★ 7.2k
1
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1
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762
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Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
8 months ago by dsull ★ 7.2k
1
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1
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541
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Answer: Answer: RNA-seq data for deep learning classification
8 months ago by dsull ★ 7.2k
1
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1
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1.3k
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Answer: Answer: How should I make kallisto indexes?
9 months ago by dsull ★ 7.2k
1
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1
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2.3k
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Answer: Answer: High Malat-1 expression in single cell data
9 months ago by dsull ★ 7.2k
0
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0
replies
1.3k
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Answer: Answer: What does it mean single base resolution in sequencing?
9 months ago by dsull ★ 7.2k
1
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1
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1.4k
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Answer: Answer: Heatmap and rna-seq
9 months ago by dsull ★ 7.2k
2
votes
1
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755
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
9 months ago by dsull ★ 7.2k
1
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2
replies
1.1k
views
Answer: Answer: To get p-values for the TPM
9 months ago by dsull ★ 7.2k
3
votes
1
reply
1.7k
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
9 months ago by dsull ★ 7.2k
0
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0
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702
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Answer: Answer: How to establish haplotype-specific gene expression levels
9 months ago by dsull ★ 7.2k
2
votes
1
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1.3k
views
Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
9 months ago by dsull ★ 7.2k
1
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1
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899
views
Answer: Answer: DESeq2 and normalization
10 months ago by dsull ★ 7.2k
1
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1
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1.7k
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
10 months ago by dsull ★ 7.2k
0
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1
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450
views
Answer: Answer: DEG (Differential expression gene) analysis
10 months ago by dsull ★ 7.2k
1
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0
replies
766
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Answer: Answer: scRNAseq normalization
10 months ago by dsull ★ 7.2k
0
votes
0
replies
338
views
Answer: Answer: STAR --sjdbGTFfile in alignment step
10 months ago by dsull ★ 7.2k
1
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1
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648
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
10 months ago by dsull ★ 7.2k
4
votes
1
reply
786
views
Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
11 months ago by dsull ★ 7.2k
225 results • Page 1 of 5
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