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Answer: Answer: How should I make kallisto indexes?
1 day ago by dsull ★ 5.9k
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253
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Answer: Answer: High Malat-1 expression in single cell data
1 day ago by dsull ★ 5.9k
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348
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Answer: Answer: What does it mean single base resolution in sequencing?
2 days ago by dsull ★ 5.9k
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660
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Answer: Answer: Heatmap and rna-seq
4 days ago by dsull ★ 5.9k
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319
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
4 days ago by dsull ★ 5.9k
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2
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475
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Answer: Answer: To get p-values for the TPM
6 days ago by dsull ★ 5.9k
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478
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
8 days ago by dsull ★ 5.9k
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344
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Answer: Answer: How to establish haplotype-specific gene expression levels
4 days ago by dsull ★ 5.9k
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526
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
20 days ago by dsull ★ 5.9k
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398
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Answer: Answer: DESeq2 and normalization
4 weeks ago by dsull ★ 5.9k
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725
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.9k
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238
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Answer: Answer: DEG (Differential expression gene) analysis
6 weeks ago by dsull ★ 5.9k
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0
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393
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Answer: Answer: scRNAseq normalization
6 weeks ago by dsull ★ 5.9k
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160
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Answer: Answer: STAR --sjdbGTFfile in alignment step
6 weeks ago by dsull ★ 5.9k
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295
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
8 weeks ago by dsull ★ 5.9k
4
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1
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368
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.9k
3
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565
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
9 weeks ago by dsull ★ 5.9k
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584
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 5.9k
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255
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Answer: Answer: Using tophat2 output for kallisto
9 weeks ago by dsull ★ 5.9k
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381
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Answer: Answer: bulk seq vs. sc-seq
11 weeks ago by dsull ★ 5.9k
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566
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Answer: Answer: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.9k
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0
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386
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Answer: Answer: How to do DESeq2 on Kallisto Data
12 weeks ago by dsull ★ 5.9k
3
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1
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623
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
3 months ago by dsull ★ 5.9k
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1.1k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify it.
3 months ago by dsull ★ 5.9k
3
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1
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325
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Answer: Answer: Using Expression of a Gene as a Linear Regression Variable
3 months ago by dsull ★ 5.9k
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1
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364
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Answer: Answer: STAR index generation killed after "inserting junctions into the genome indices"
updated 3 months ago by 82k • written 3 months ago by ★ 5.9k
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558
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Answer: Answer: Kallisto-Bustools Output prpblems
4 months ago by dsull ★ 5.9k
2
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1
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570
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Answer: Answer: Kallisto-bustools output to Seurat Object
4 months ago by dsull ★ 5.9k
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777
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Answer: Answer: bwa-mem reproducibility
4 months ago by dsull ★ 5.9k
3
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1
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1.1k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
4 months ago by dsull ★ 5.9k
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591
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Answer: Answer: Should SMART-seq2 data be deduplicated in STAR?
5 months ago by dsull ★ 5.9k
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623
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Answer: Answer: Three questions about datasets
5 months ago by dsull ★ 5.9k
2
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1
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646
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Answer: Answer: Smart seq3 analysis
5 months ago by dsull ★ 5.9k
2
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0
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575
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Answer: Answer: salmon for gene expression quantification
5 months ago by dsull ★ 5.9k
1
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1
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689
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Answer: Answer: Quality filtering prior to pseudoalignment
5 months ago by dsull ★ 5.9k
3
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1
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675
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Answer: Answer: Why am I getting different results with kallisto?
5 months ago by dsull ★ 5.9k
1
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0
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318
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Answer: Answer: Intenger encoding versus one-hot encoding for chromosome as a predictor in a neu
6 months ago by dsull ★ 5.9k
1
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1
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1.0k
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Answer: Answer: Best command line tool for downloading sequencing reads
6 months ago by dsull ★ 5.9k
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1
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486
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Answer: Answer: GSEA analysis for phosphoproteins
6 months ago by dsull ★ 5.9k
1
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1
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690
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Answer: Answer: How to assign gene names after kallisto when I add GFP?
7 months ago by dsull ★ 5.9k
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0
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1.8k
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Answer: Answer: Unmapped Reads in Kallisto
7 months ago by dsull ★ 5.9k
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1
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1.1k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
8 months ago by dsull ★ 5.9k
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0
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by dsull ★ 5.9k
2
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1
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471
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Answer: Answer: Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
8 months ago by dsull ★ 5.9k
0
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1
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538
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Answer: Answer: Extracting RNA sequence - single cell
8 months ago by dsull ★ 5.9k
1
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1
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908
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Answer: Answer: Problem creating salmon index
9 months ago by dsull ★ 5.9k
1
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2
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735
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Answer: Answer: Where can I find the --chromosomes file for kallisto?
9 months ago by dsull ★ 5.9k
1
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1
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700
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Answer: Answer: MAGeCK MLE's sgRNA efficacies always end up at 1.0
10 months ago by dsull ★ 5.9k
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1
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1.7k
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Answer: Answer: Threshold for a value of RPKM considered significant
10 months ago by dsull ★ 5.9k
2
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1
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607
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Answer: Answer: How to convert Kallisto output to Salmon?
10 months ago by dsull ★ 5.9k
191 results • Page 1 of 4
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