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Answer: Answer: Unaligned rRNA in RNAseq in balb/cj mouse
6 days ago by dsull ★ 6.8k
3
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1
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837
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Answer: Answer: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
11 days ago by dsull ★ 6.8k
1
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1
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397
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Answer: Answer: Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
20 days ago by dsull ★ 6.8k
2
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1
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432
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Answer: Answer: DNA SPRITE Expirment Benchmark
25 days ago by dsull ★ 6.8k
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0
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260
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Answer: Answer: unmapped reads Kallisto bulk RNA-seq
4 weeks ago by dsull ★ 6.8k
2
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0
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239
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Answer: Answer: extracting cell specific reads from cellranger BAM output file
5 weeks ago by dsull ★ 6.8k
0
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0
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406
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Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
7 weeks ago by dsull ★ 6.8k
5
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1
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1.0k
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Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
7 weeks ago by dsull ★ 6.8k
0
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0
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303
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Answer: Answer: Fragment size of published single end RNAseq data
7 weeks ago by dsull ★ 6.8k
2
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1
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268
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Answer: Answer: kb count -x parameter - what are the three parts?
8 weeks ago by dsull ★ 6.8k
2
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0
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283
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Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
8 weeks ago by dsull ★ 6.8k
2
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1
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410
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Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
8 weeks ago by dsull ★ 6.8k
1
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2
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1.3k
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Answer: Answer: RNA STAR and trimming
9 weeks ago by dsull ★ 6.8k
0
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0
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844
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Answer: Answer: Conversion of Gene Name to Ensembl ID
9 weeks ago by dsull ★ 6.8k
0
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1
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568
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Answer: Answer: DESeq2 for DE analysis of proteins
9 weeks ago by dsull ★ 6.8k
2
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1
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435
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Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
9 weeks ago by dsull ★ 6.8k
0
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1
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425
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Answer: Answer: indexing the drosophila genome for kallisto
10 weeks ago by dsull ★ 6.8k
1
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0
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332
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Answer: Answer: STAR Index error
10 weeks ago by dsull ★ 6.8k
4
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2
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567
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Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
3 months ago by dsull ★ 6.8k
0
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0
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328
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Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
3 months ago by dsull ★ 6.8k
1
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1
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524
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Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
4 months ago by dsull ★ 6.8k
1
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1
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429
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Answer: Answer: RNA-seq data for deep learning classification
4 months ago by dsull ★ 6.8k
1
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1
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882
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Answer: Answer: How should I make kallisto indexes?
4 months ago by dsull ★ 6.8k
1
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1
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1.7k
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Answer: Answer: High Malat-1 expression in single cell data
4 months ago by dsull ★ 6.8k
0
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0
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846
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Answer: Answer: What does it mean single base resolution in sequencing?
4 months ago by dsull ★ 6.8k
1
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1
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1.1k
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Answer: Answer: Heatmap and rna-seq
4 months ago by dsull ★ 6.8k
2
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1
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536
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
4 months ago by dsull ★ 6.8k
1
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2
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844
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Answer: Answer: To get p-values for the TPM
4 months ago by dsull ★ 6.8k
3
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1
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1.1k
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
4 months ago by dsull ★ 6.8k
0
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0
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523
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Answer: Answer: How to establish haplotype-specific gene expression levels
4 months ago by dsull ★ 6.8k
2
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1
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912
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
5 months ago by dsull ★ 6.8k
1
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1
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635
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Answer: Answer: DESeq2 and normalization
5 months ago by dsull ★ 6.8k
1
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1
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1.1k
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
5 months ago by dsull ★ 6.8k
0
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1
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365
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Answer: Answer: DEG (Differential expression gene) analysis
5 months ago by dsull ★ 6.8k
1
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0
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596
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Answer: Answer: scRNAseq normalization
5 months ago by dsull ★ 6.8k
0
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0
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251
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Answer: Answer: STAR --sjdbGTFfile in alignment step
6 months ago by dsull ★ 6.8k
1
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1
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484
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
6 months ago by dsull ★ 6.8k
4
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1
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584
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
6 months ago by dsull ★ 6.8k
3
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0
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785
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
6 months ago by dsull ★ 6.8k
0
votes
0
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861
views
Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 6 months ago by 44k • written 6 months ago by ★ 6.8k
0
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0
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358
views
Answer: Answer: Using tophat2 output for kallisto
6 months ago by dsull ★ 6.8k
2
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1
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535
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Answer: Answer: bulk seq vs. sc-seq
7 months ago by dsull ★ 6.8k
0
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1
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837
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Answer: Answer: Differential expression analysis with very high duplication rate
7 months ago by dsull ★ 6.8k
1
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0
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545
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Answer: Answer: How to do DESeq2 on Kallisto Data
7 months ago by dsull ★ 6.8k
3
votes
1
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995
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
7 months ago by dsull ★ 6.8k
1
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1
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1.5k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify it.
7 months ago by dsull ★ 6.8k
3
votes
1
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464
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Answer: Answer: Using Expression of a Gene as a Linear Regression Variable
8 months ago by dsull ★ 6.8k
2
votes
1
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593
views
Answer: Answer: STAR index generation killed after "inserting junctions into the genome indices"
updated 8 months ago by 84k • written 8 months ago by ★ 6.8k
1
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1
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726
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Answer: Answer: Kallisto-Bustools Output prpblems
8 months ago by dsull ★ 6.8k
2
votes
1
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806
views
Answer: Answer: Kallisto-bustools output to Seurat Object
8 months ago by dsull ★ 6.8k
213 results • Page 1 of 5
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