Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
1
reply
705
views
Answer: Answer: Best Tool for Fast RNA-Seq Transcriptome Alignment to Extract Unmapped Reads
4 weeks ago by dsull ★ 7.6k
0
votes
1
reply
1.6k
views
Answer: Answer: STAR aligner problem on local laptop
7 weeks ago by dsull ★ 7.6k
3
votes
2
replies
1.1k
views
Answer: Answer: How common is it to split fastq files prior to bwa mem to increase parallelizati
8 weeks ago by dsull ★ 7.6k
4
votes
0
replies
468
views
Answer: Answer: Definitions for "differential expression" and "differential abundance" in RNA-se
9 weeks ago by dsull ★ 7.6k
1
vote
1
reply
1.0k
views
Answer: Answer: Transcript identification and quantification
10 weeks ago by dsull ★ 7.6k
2
votes
1
reply
767
views
Answer: Answer: Pre-Made STAR Index for mm10 Mouse Genome
11 weeks ago by dsull ★ 7.6k
4
votes
1
reply
1.1k
views
Answer: Answer: STAR vs. Kallisto
10 weeks ago by dsull ★ 7.6k
0
votes
1
reply
587
views
Answer: Answer: Single Nuclei RNA-Sequencing Analysis Without CellRanger
3 months ago by dsull ★ 7.6k
1
vote
0
replies
710
views
Answer: Answer: Parsing BAM file per cell from Smart-Seq2 dataset
4 months ago by dsull ★ 7.6k
0
votes
0
replies
624
views
Answer: Answer: Salmon RNA-Seq transcript quantification
4 months ago by dsull ★ 7.6k
2
votes
1
reply
1.4k
views
Answer: Answer: What is the current state of the beef against UMAP/tSNE in the context of sc tra
4 months ago by dsull ★ 7.6k
1
vote
1
reply
1.2k
views
Answer: Answer: Manual conversion of VCF genotypes to nucleotide sequence
4 months ago by dsull ★ 7.6k
2
votes
1
reply
786
views
Answer: Answer: How to handle paired and unpaired reads in RNAseq pipeline
5 months ago by dsull ★ 7.6k
0
votes
1
reply
1.4k
views
Answer: Answer: Preparation needed to get into Bioinformatic field
5 months ago by dsull ★ 7.6k
3
votes
2
replies
1.2k
views
Answer: Answer: How well was the rRNA depletion for RNA-Seq experiments
5 months ago by dsull ★ 7.6k
1
vote
2
replies
993
views
Answer: Answer: How to do allele specific expression analysis (ASE)
5 months ago by dsull ★ 7.6k
3
votes
0
replies
1.3k
views
Answer: Answer: Premade RNA-seq pipeline or custom
6 months ago by dsull ★ 7.6k
1
vote
0
replies
776
views
Answer: Answer: rRNA contamination in RNASeq fdata
6 months ago by dsull ★ 7.6k
2
votes
0
replies
697
views
Answer: Answer: STARsolo sorted bam contains 'non-whitelisted' barcodes
6 months ago by dsull ★ 7.6k
1
vote
0
replies
459
views
Answer: Answer: No change in quality score graph even after adapter removal
7 months ago by dsull ★ 7.6k
0
votes
0
replies
746
views
Answer: Answer: Spatial correlation between two continuous variables
7 months ago by dsull ★ 7.6k
3
votes
1
reply
1.5k
views
Answer: Answer: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
5 weeks ago by dsull ★ 7.6k
0
votes
0
replies
991
views
Answer: Answer: PossionDis method for identification of differentially expressed genes.
7 months ago by dsull ★ 7.6k
3
votes
2
replies
1.3k
views
Answer: Answer: How to handle RNA seq data with unbalanced % rRNA by group?
9 months ago by dsull ★ 7.6k
2
votes
0
replies
655
views
Answer: Answer: How far pangenome from being the mainstream?
9 months ago by dsull ★ 7.6k
1
vote
1
reply
1.6k
views
Answer: Answer: Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
9 months ago by dsull ★ 7.6k
0
votes
1
reply
1.4k
views
Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
10 months ago by dsull ★ 7.6k
1
vote
1
reply
843
views
Answer: Answer: Unaligned rRNA in RNAseq in balb/cj mouse
10 months ago by dsull ★ 7.6k
3
votes
1
reply
1.6k
views
Answer: Answer: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
10 months ago by dsull ★ 7.6k
1
vote
1
reply
1.0k
views
Answer: Answer: Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
10 months ago by dsull ★ 7.6k
2
votes
1
reply
968
views
Answer: Answer: DNA SPRITE Expirment Benchmark
11 months ago by dsull ★ 7.6k
0
votes
0
replies
581
views
Answer: Answer: unmapped reads Kallisto bulk RNA-seq
11 months ago by dsull ★ 7.6k
2
votes
0
replies
715
views
Answer: Answer: extracting cell specific reads from cellranger BAM output file
11 months ago by dsull ★ 7.6k
0
votes
0
replies
850
views
Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
11 months ago by dsull ★ 7.6k
5
votes
1
reply
3.0k
views
Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
11 months ago by dsull ★ 7.6k
0
votes
0
replies
658
views
Answer: Answer: Fragment size of published single end RNAseq data
12 months ago by dsull ★ 7.6k
2
votes
1
reply
707
views
Answer: Answer: kb count -x parameter - what are the three parts?
12 months ago by dsull ★ 7.6k
2
votes
0
replies
598
views
Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
12 months ago by dsull ★ 7.6k
2
votes
1
reply
865
views
Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
12 months ago by dsull ★ 7.6k
1
vote
2
replies
3.1k
views
Answer: Answer: RNA STAR and trimming
12 months ago by dsull ★ 7.6k
0
votes
0
replies
2.2k
views
Answer: Answer: Conversion of Gene Name to Ensembl ID
12 months ago by dsull ★ 7.6k
0
votes
1
reply
1.3k
views
Answer: Answer: DESeq2 for DE analysis of proteins
12 months ago by dsull ★ 7.6k
2
votes
1
reply
889
views
Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
12 months ago by dsull ★ 7.6k
0
votes
1
reply
905
views
Answer: Answer: indexing the drosophila genome for kallisto
12 months ago by dsull ★ 7.6k
1
vote
0
replies
816
views
Answer: Answer: STAR Index error
12 months ago by dsull ★ 7.6k
4
votes
2
replies
1.6k
views
Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
13 months ago by dsull ★ 7.6k
0
votes
0
replies
691
views
Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
13 months ago by dsull ★ 7.6k
1
vote
1
reply
1.3k
views
Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
14 months ago by dsull ★ 7.6k
1
vote
1
reply
855
views
Answer: Answer: RNA-seq data for deep learning classification
14 months ago by dsull ★ 7.6k
1
vote
1
reply
2.0k
views
Answer: Answer: How should I make kallisto indexes?
14 months ago by dsull ★ 7.6k
240 results • Page 1 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6