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290
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Answer: Answer: Definitions for "differential expression" and "differential abundance" in RNA-se
7 days ago by dsull ★ 7.5k
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751
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Answer: Answer: Transcript identification and quantification
12 days ago by dsull ★ 7.5k
2
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1
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508
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Answer: Answer: Pre-Made STAR Index for mm10 Mouse Genome
20 days ago by dsull ★ 7.5k
4
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1
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742
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Answer: Answer: STAR vs. Kallisto
16 days ago by dsull ★ 7.5k
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381
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Answer: Answer: Single Nuclei RNA-Sequencing Analysis Without CellRanger
5 weeks ago by dsull ★ 7.5k
1
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0
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463
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Answer: Answer: Parsing BAM file per cell from Smart-Seq2 dataset
8 weeks ago by dsull ★ 7.5k
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403
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Answer: Answer: Salmon RNA-Seq transcript quantification
9 weeks ago by dsull ★ 7.5k
2
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1
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913
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Answer: Answer: What is the current state of the beef against UMAP/tSNE in the context of sc tra
10 weeks ago by dsull ★ 7.5k
1
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1
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925
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Answer: Answer: Manual conversion of VCF genotypes to nucleotide sequence
11 weeks ago by dsull ★ 7.5k
2
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1
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557
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Answer: Answer: How to handle paired and unpaired reads in RNAseq pipeline
3 months ago by dsull ★ 7.5k
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1
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1.1k
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Answer: Answer: Preparation needed to get into Bioinformatic field
3 months ago by dsull ★ 7.5k
3
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2
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946
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Answer: Answer: How well was the rRNA depletion for RNA-Seq experiments
3 months ago by dsull ★ 7.5k
1
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2
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687
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Answer: Answer: How to do allele specific expression analysis (ASE)
3 months ago by dsull ★ 7.5k
3
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1.0k
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Answer: Answer: Premade RNA-seq pipeline or custom
4 months ago by dsull ★ 7.5k
1
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653
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Answer: Answer: rRNA contamination in RNASeq fdata
4 months ago by dsull ★ 7.5k
2
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0
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567
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Answer: Answer: STARsolo sorted bam contains 'non-whitelisted' barcodes
4 months ago by dsull ★ 7.5k
1
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371
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Answer: Answer: No change in quality score graph even after adapter removal
5 months ago by dsull ★ 7.5k
0
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0
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571
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Answer: Answer: Spatial correlation between two continuous variables
5 months ago by dsull ★ 7.5k
3
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1
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1.1k
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Answer: Answer: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
5 months ago by dsull ★ 7.5k
0
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0
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782
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Answer: Answer: PossionDis method for identification of differentially expressed genes.
5 months ago by dsull ★ 7.5k
3
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2
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1.1k
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Answer: Answer: How to handle RNA seq data with unbalanced % rRNA by group?
7 months ago by dsull ★ 7.5k
2
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0
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538
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Answer: Answer: How far pangenome from being the mainstream?
7 months ago by dsull ★ 7.5k
1
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1
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1.4k
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Answer: Answer: Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
7 months ago by dsull ★ 7.5k
0
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1
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1.2k
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Answer: Answer: Chromium 5’ Next GEM single cell STARsolo
8 months ago by dsull ★ 7.5k
1
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1
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696
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Answer: Answer: Unaligned rRNA in RNAseq in balb/cj mouse
8 months ago by dsull ★ 7.5k
3
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1
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1.4k
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Answer: Answer: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
8 months ago by dsull ★ 7.5k
1
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1
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857
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Answer: Answer: Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
8 months ago by dsull ★ 7.5k
2
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1
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840
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Answer: Answer: DNA SPRITE Expirment Benchmark
9 months ago by dsull ★ 7.5k
0
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0
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485
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Answer: Answer: unmapped reads Kallisto bulk RNA-seq
9 months ago by dsull ★ 7.5k
2
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0
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571
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Answer: Answer: extracting cell specific reads from cellranger BAM output file
9 months ago by dsull ★ 7.5k
0
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0
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740
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Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
9 months ago by dsull ★ 7.5k
5
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1
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2.5k
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Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
9 months ago by dsull ★ 7.5k
0
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0
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561
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Answer: Answer: Fragment size of published single end RNAseq data
10 months ago by dsull ★ 7.5k
2
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1
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558
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Answer: Answer: kb count -x parameter - what are the three parts?
10 months ago by dsull ★ 7.5k
2
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0
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463
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Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
10 months ago by dsull ★ 7.5k
2
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1
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713
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Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
10 months ago by dsull ★ 7.5k
1
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2
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2.7k
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Answer: Answer: RNA STAR and trimming
10 months ago by dsull ★ 7.5k
0
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0
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1.9k
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Answer: Answer: Conversion of Gene Name to Ensembl ID
10 months ago by dsull ★ 7.5k
0
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1
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1.1k
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Answer: Answer: DESeq2 for DE analysis of proteins
10 months ago by dsull ★ 7.5k
2
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1
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784
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Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
10 months ago by dsull ★ 7.5k
0
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1
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760
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Answer: Answer: indexing the drosophila genome for kallisto
10 months ago by dsull ★ 7.5k
1
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0
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706
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Answer: Answer: STAR Index error
10 months ago by dsull ★ 7.5k
4
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2
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1.4k
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Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
11 months ago by dsull ★ 7.5k
0
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0
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584
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Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
11 months ago by dsull ★ 7.5k
1
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1
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1.1k
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Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
12 months ago by dsull ★ 7.5k
1
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1
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699
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Answer: Answer: RNA-seq data for deep learning classification
12 months ago by dsull ★ 7.5k
1
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1
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1.7k
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Answer: Answer: How should I make kallisto indexes?
12 months ago by dsull ★ 7.5k
1
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1
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3.0k
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Answer: Answer: High Malat-1 expression in single cell data
12 months ago by dsull ★ 7.5k
0
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0
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1.7k
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Answer: Answer: What does it mean single base resolution in sequencing?
12 months ago by dsull ★ 7.5k
1
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1
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1.7k
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Answer: Answer: Heatmap and rna-seq
12 months ago by dsull ★ 7.5k
237 results • Page 1 of 5
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