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answers
1
vote
1
reply
1.1k
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Answer:
Answer: Downloading viral database
3.0 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
0
replies
1.1k
views
Answer:
Answer: bedtools getfasta command
3.1 years ago by
vkkodali_ncbi
★ 3.7k
5
votes
2
replies
2.2k
views
Answer:
Answer: Choosing a single consensus promoter/transcript for each gene (Mouse)
3.1 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
1
reply
2.3k
views
Answer:
Answer: How to download entire human protein sequences from RefSeq database hrough comma
3.1 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
5.8k
views
Answer:
Answer: Translating gene names to entrez id's
3.1 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
2
replies
1.6k
views
Answer:
A: Command line Taxa search within SRA / NCBI Trace
3.2 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
812
views
Answer:
A: Finding gene of interest in data downloaded from SRA
3.2 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
1
reply
4.0k
views
Answer:
A: Batch download genome feature file by RefSeq
3.2 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
810
views
Answer:
A: Extract CDS product from Genbank file with coordinate range
3.2 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
1
reply
1.7k
views
Answer:
C: Stringtie transcripts to Gene Name
3.3 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
825
views
Answer:
A: NCBI Genome Workbench tool
3.3 years ago by
vkkodali_ncbi
★ 3.7k
3
votes
0
replies
3.1k
views
Answer:
A: downloading full genbank file using Entrez efetch
3.4 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
1.0k
views
Answer:
A: Get corresponding Biosample accessions for very large list of SRA accesions?
3.4 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
1
reply
915
views
Answer:
C: What kinds of gene ID types like below??
3.4 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
2.4k
views
Answer:
A: Is there any tool/API available to convert GTF/GFF to JSON format?
3.4 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
0
replies
4.1k
views
Answer:
A: Easiest way to homogenize gene aliases across datasets?
updated 3.4 years ago by
h.mon
35k • written 3.4 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
2
replies
3.8k
views
Answer:
A: converting RefSeq Protein (NCBI) accession numbers to Gene Symbol
3.4 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
1
reply
4.0k
views
Answer:
A: Conversion of gene id to Refseq/gene symbol
3.4 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
1
reply
3.1k
views
Answer:
A: how to batch download SARS-CoV-2 sequences data from NCBI?
3.4 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
1.9k
views
Answer:
A: Best way to get gene IDs for Salmon transcript output
3.4 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
1
reply
1.4k
views
Answer:
A: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
3.4 years ago by
vkkodali_ncbi
★ 3.7k
11
votes
2
replies
14k
views
Answer:
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
3.4 years ago by
vkkodali_ncbi
★ 3.7k
3
votes
2
replies
1.2k
views
Answer:
A: Sequence Retrieval of SARS-CoV Complete Genomes
3.5 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
1
reply
2.1k
views
Answer:
C: Getting a gff file from NCBI
3.5 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
1
reply
1.8k
views
Answer:
A: How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
updated 3.5 years ago by
GenoMax
142k • written 3.5 years ago by
vkkodali_ncbi
★ 3.7k
3
votes
1
reply
2.6k
views
Answer:
C: BAM to FASTQ discards most reads as singletons though flagstat says otherwise
3.7 years ago by
vkkodali_ncbi
★ 3.7k
3
votes
0
replies
951
views
Answer:
A: Unkown NCBI genome chromosomes
3.7 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
1.0k
views
Answer:
A: Create a database of RefSeq genes
3.7 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
2
replies
4.5k
views
Answer:
Answer: Gene starts with "LOC" prefix ?
3.8 years ago by
vkkodali_ncbi
★ 3.7k
4
votes
1
reply
2.9k
views
Answer:
A: How to pull metadata from SRA based on BioSample ID
3.8 years ago by
vkkodali_ncbi
★ 3.7k
3
votes
0
replies
936
views
Answer:
A: How do I get the refseq IDs from a list of gene IDs
4.0 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
3
replies
1.5k
views
Answer:
A: Bioinformatics: Converting EntrezGeneID to FASTA entry for BLAST alignment
4.0 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
1.5k
views
Answer:
A: Why is the hg38 exome so much bigger than hg19?
4.0 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
1
reply
1.6k
views
Answer:
A: how I can download 2,333 genomes from the NCBI database ?
4.0 years ago by
vkkodali_ncbi
★ 3.7k
3
votes
0
replies
2.2k
views
Answer:
A: Finding the Refseq Soft-masked Regions
4.0 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
2.1k
views
Answer:
A: CpG islands for ARS-UCD1.2 Bos taurus genome?
4.1 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
1.3k
views
Answer:
A: How reliable are the ensembl transcript isoforms?
4.1 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
0
replies
5.7k
views
Answer:
C: Modify chromosome name in fasta file
4.1 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
0
replies
1.8k
views
Answer:
A: From a list of RefSeq protein IDs to assembly accessions
4.1 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
1
reply
1.4k
views
Answer:
A: Extract protein files from nucleotide accession numbers
4.1 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
1.3k
views
Answer:
A: Fetching a representative genome, gene and protein IDs from NCBI using a list o
4.1 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
1
reply
1.4k
views
Answer:
A: esearch command-line tool only returns summary of hits?
4.1 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
0
replies
1.2k
views
Answer:
A: Uncommon wget behavior with ncbi genomes
4.1 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
758
views
Answer:
A: Detect leaderless proteins from a genes/proteins list
4.1 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
2
replies
1.7k
views
Answer:
A: how to find the kingdom for a taxon id using the terminal?
4.2 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
1.3k
views
Answer:
A: Refseq sequences gene position extraction
4.2 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
8.4k
views
Answer:
A: Naming Chromosomes: From Ncbi Nc_0000Abc To Ucsc Chrabc
4.2 years ago by
vkkodali_ncbi
★ 3.7k
0
votes
1
reply
1.6k
views
Answer:
A: Using Entrez to find the taxonomy for an accession number
4.2 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
1
reply
1.6k
views
Answer:
C: How to download from ncbi not a whole FASTA file, but only a certain interval?
4.2 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
2.7k
views
Answer:
A: Fetching Genbank Assembly IDs with protein
4.3 years ago by
vkkodali_ncbi
★ 3.7k
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