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2
votes
1
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2.9k
views
Answer: A: Huge difference in BWA mapping times
updated 4.7 years ago by 44k • written 8.6 years ago by 13k
1
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1
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5.0k
views
Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 4.7 years ago by 44k • written 8.6 years ago by 13k
5
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1
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5.4k
views
Answer: A: PhD research proposal - Need current topics
updated 4.7 years ago by 44k • written 8.6 years ago by 13k
0
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0
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6.7k
views
Answer: A: Multiprocessing in Python with subprocess to align several files with coding DNA
updated 4.7 years ago by 44k • written 8.6 years ago by 13k
2
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0
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6.8k
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Answer: A: IGV not showing the variants detected by GATK and Varscan
updated 4.8 years ago by 44k • written 8.8 years ago by 13k
2
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2
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3.1k
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Answer: A: In Jellyfish, what does the "-C" switch do?
updated 4.8 years ago by 44k • written 8.8 years ago by 13k
0
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0
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8.0k
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Answer: A: Installing cutadapt on OS X
updated 4.8 years ago by 44k • written 8.9 years ago by 13k
0
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1
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2.0k
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Answer: A: Post tagging etiquette musings
updated 4.8 years ago by 44k • written 8.9 years ago by 13k
5
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1
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16k
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Answer: A: vcf to bam
updated 4.8 years ago by 44k • written 9.0 years ago by 13k
0
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1
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4.6k
views
Answer: A: Design arbitrary degenerate primers (with non-binding criteria)
updated 4.9 years ago by 44k • written 9.2 years ago by 13k
1
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1
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3.0k
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Answer: Answer: All sam flags specifying first mate?
updated 21 months ago by 44k • written 9.2 years ago by 13k
3
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2
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3.5k
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Answer: A: Correlating ChIP-Seq peaks with isoform level expression
updated 4.9 years ago by 44k • written 9.3 years ago by 13k
2
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0
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21k
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Answer: A: Checking fastq is valid
updated 5.3 years ago by 44k • written 7.7 years ago by 13k
2
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0
replies
2.6k
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Answer: A: BAM files for RRBS data in ENCODE Project
updated 6.0 years ago by 44k • written 8.6 years ago by 13k
1
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0
replies
4.0k
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Answer: A: Sort Sequences In A Fasta File According To The peg List
updated 6.0 years ago by 44k • written 8.6 years ago by 13k
2
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0
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2.5k
views
Answer: A: "Good" epigenetic histone modification ChIP-seq datasets
updated 6.0 years ago by 44k • written 8.6 years ago by 13k
3
votes
0
replies
5.5k
views
Answer: A: Check BAMs are complete and clean
updated 6.0 years ago by 44k • written 8.6 years ago by 13k
1
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1
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2.6k
views
Answer: A: Is there an authoritative source for optional BAM tags?
updated 6.0 years ago by 44k • written 8.6 years ago by 13k
2
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0
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26k
views
Answer: A: Check if BAM is derived from pair-end or single-end reads?
updated 6.0 years ago by 44k • written 8.3 years ago by 13k
0
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0
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39k
views
Answer: A: How To Get Number Of Reads In Bam File Efficiently In Python?
updated 6.0 years ago by 44k • written 9.6 years ago by 13k
2
votes
1
reply
11k
views
Answer: A: cannot import pysam. Module has no attribute error
updated 6.0 years ago by 44k • written 8.7 years ago by 13k
0
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0
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4.1k
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Answer: A: Is there any disease mainly caused by underexpression or overexpression of some
6.9 years ago by John 13k
3
votes
0
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23k
views
Answer: A: Meaning of BWA-MEM MAPQ values
6.9 years ago by John 13k
25
votes
2
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100k
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Answer: A: samtools sorting and indexing
7.2 years ago by John 13k
5
votes
2
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15k
views
Answer: A: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
7.3 years ago by John 13k
0
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0
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2.3k
views
Answer: C: Keeping Tags That Are Mapped To The Same Place By Two Aligners
7.3 years ago by John 13k
2
votes
1
reply
6.5k
views
Answer: A: Why bioinformaticians need to know programming languages?
7.3 years ago by John 13k
2
votes
1
reply
2.5k
views
Answer: A: Collaboration on an empirical QC tool
7.4 years ago by John 13k
2
votes
0
replies
2.9k
views
Answer: A: why does this pipe work
7.4 years ago by John 13k
7
votes
1
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6.9k
views
Answer: A: Good practices while dealing with very large datasets
7.4 years ago by John 13k
1
vote
2
replies
12k
views
Answer: C: Programming language use distribution from recent programs / articles
7.4 years ago by John 13k
1
vote
1
reply
20k
views
Answer: A: pybam - 100% python BAM reader
7.4 years ago by John 13k
0
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1
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2.6k
views
Answer: A: SAM to BAM conversion issues
7.4 years ago by John 13k
1
vote
0
replies
3.8k
views
Answer: A: identification of adapters from fastq file.
updated 7.5 years ago by 47k • written 7.5 years ago by 13k
4
votes
2
replies
3.4k
views
Answer: A: What to use after Salmon
7.5 years ago by John 13k
4
votes
1
reply
2.6k
views
Answer: C: Does jellyfish 2 support kmer size > 31
7.5 years ago by John 13k
0
votes
1
reply
4.2k
views
Answer: A: basic concepts behind --sjdbOverhang (STAR)
7.5 years ago by John 13k
7
votes
1
reply
3.4k
views
Answer: A: How do you perform functional testing for your Bioinformatics tools?
7.5 years ago by John 13k
1
vote
0
replies
6.2k
views
Answer: A: bam stats F1F2/F1R2/R1F2/R1R2/F2F1/F2R1/R2F1/R2R1
7.5 years ago by John 13k
0
votes
3
replies
7.9k
views
Answer: A: fasta seq header
7.6 years ago by John 13k
1
vote
0
replies
2.2k
views
Answer: A: Hand-waving Multidisciplinary Aspects of Research Projects (Discussion)
7.6 years ago by John 13k
3
votes
2
replies
4.0k
views
Answer: A: Explaining purpose of using FASTQC to a colleague
7.6 years ago by John 13k
3
votes
0
replies
3.2k
views
Answer: A: Error sorted paired-end .bam using samtools
7.7 years ago by John 13k
0
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1
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1.3k
views
Answer: A: Essential TeX functions/packages
7.7 years ago by John 13k
1
vote
2
replies
2.9k
views
Answer: A: Possible bug in seqkit?
7.7 years ago by John 13k
1
vote
1
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35k
views
Answer: A: Duplicates on Illumina
7.7 years ago by John 13k
3
votes
4
replies
5.4k
views
Answer: A: Example of how bioinformaticians can publish in Scientific Reports (by nature pu
7.7 years ago by John 13k
0
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1
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2.3k
views
Answer: A: error when running MarkDuplicates
7.7 years ago by John 13k
2
votes
1
reply
1.4k
views
Answer: A: Why my regular expression fails to match all the reasonable seq?
7.7 years ago by John 13k
0
votes
1
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9.4k
views
Answer: A: BAM to FASTQ
7.7 years ago by John 13k
186 results • Page 1 of 4
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