Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
3
replies
4.6k
views
Comment: Comment: For the general public seeking advice from this community
updated 2.7 years ago by 45k • written 9.6 years ago by 13k
0
votes
0
replies
14k
views
Comment: C: Improving efficiency of awk for large files
updated 5.5 years ago by 45k • written 9.8 years ago by 13k
0
votes
2
replies
14k
views
Comment: C: Improving efficiency of awk for large files
updated 5.5 years ago by 45k • written 9.8 years ago by 13k
0
votes
1
reply
5.3k
views
Comment: C: Design arbitrary degenerate primers (with non-binding criteria)
updated 5.5 years ago by 45k • written 9.9 years ago by 13k
0
votes
0
replies
5.3k
views
Comment: C: Design arbitrary degenerate primers (with non-binding criteria)
updated 5.5 years ago by 45k • written 9.9 years ago by 13k
0
votes
1
reply
5.3k
views
Answer: A: Design arbitrary degenerate primers (with non-binding criteria)
updated 5.5 years ago by 45k • written 9.9 years ago by 13k
0
votes
0
replies
3.4k
views
Comment: C: Cases where indexing is efficient for read retrieval
updated 5.5 years ago by 45k • written 9.9 years ago by 13k
0
votes
1
reply
7.5k
views
Comment: C: Sublime Text 2: Output Error After I Installed Anaconda
updated 5.5 years ago by 45k • written 9.9 years ago by 13k
1
vote
1
reply
3.2k
views
Answer: Answer: All sam flags specifying first mate?
updated 2.4 years ago by 45k • written 9.9 years ago by 13k
3
votes
2
replies
3.9k
views
Answer: A: Correlating ChIP-Seq peaks with isoform level expression
updated 5.5 years ago by 45k • written 9.9 years ago by 13k
6
votes
1
reply
3.7k
views
Comment: Comment: Cost of computing
updated 2.4 years ago by 45k • written 10.0 years ago by 13k
1
vote
1
reply
8.9k
views
Comment: C: How to reduce reads in fastq, bam, bed files in a random manner?
updated 5.6 years ago by 45k • written 10.7 years ago by 13k
1
vote
1
reply
3.4k
views
Comment: C: split fastq by @SEQID
updated 5.7 years ago by 45k • written 9.2 years ago by 13k
7
votes
2
replies
78k
views
Comment: C: VCF files: Change Chromosome Notation
updated 5.9 years ago by 45k • written 9.3 years ago by 13k
2
votes
0
replies
23k
views
Answer: A: Checking fastq is valid
updated 6.0 years ago by 45k • written 8.4 years ago by 13k
2
votes
1
reply
2.3k
views
Calling SNPs on Bisulphite Data
bissnp GATK
updated 2.8 years ago by 45k • written 9.5 years ago by 13k
2
votes
0
replies
2.8k
views
Answer: A: BAM files for RRBS data in ENCODE Project
updated 6.7 years ago by 45k • written 9.3 years ago by 13k
1
vote
0
replies
4.7k
views
Answer: A: Sort Sequences In A Fasta File According To The peg List
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
2
votes
0
replies
2.7k
views
Answer: A: "Good" epigenetic histone modification ChIP-seq datasets
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
3
votes
0
replies
5.9k
views
Answer: A: Check BAMs are complete and clean
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
0
votes
0
replies
5.9k
views
Comment: C: Check BAMs are complete and clean
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
7
votes
6
replies
3.0k
views
Is there an authoritative source for optional BAM tags?
BAM Duplicates MarkDuplicates Picard
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
1
vote
1
reply
3.0k
views
Answer: A: Is there an authoritative source for optional BAM tags?
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
0
votes
1
reply
3.0k
views
Comment: C: Is there an authoritative source for optional BAM tags?
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
0
votes
1
reply
11k
views
Comment: C: Questions about multithreading of BWA
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
2
votes
0
replies
27k
views
Answer: A: Check if BAM is derived from pair-end or single-end reads?
updated 6.7 years ago by 45k • written 9.0 years ago by 13k
0
votes
0
replies
8.4k
views
Comment: C: split bed file into several bed files where each region is separated of any othe
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
0
votes
1
reply
8.4k
views
Comment: C: split bed file into several bed files where each region is separated of any othe
updated 6.7 years ago by 45k • written 9.2 years ago by 13k
0
votes
0
replies
41k
views
Answer: A: How To Get Number Of Reads In Bam File Efficiently In Python?
updated 6.7 years ago by 45k • written 10.2 years ago by 13k
2
votes
1
reply
12k
views
Answer: A: cannot import pysam. Module has no attribute error
updated 6.7 years ago by 45k • written 9.4 years ago by 13k
0
votes
0
replies
12k
views
Comment: C: BQSR: when it is applicable?
7.5 years ago by John 13k
1
vote
1
reply
12k
views
Comment: C: BQSR: when it is applicable?
7.6 years ago by John 13k
0
votes
0
replies
12k
views
Comment: C: BQSR: when it is applicable?
7.6 years ago by John 13k
0
votes
0
replies
2.8k
views
Comment: C: How to tell if a FastQ file is a concatinate of 2 seperate illumina runs?
7.6 years ago by John 13k
1
vote
1
reply
2.8k
views
Comment: C: How to tell if a FastQ file is a concatinate of 2 seperate illumina runs?
7.6 years ago by John 13k
1
vote
2
replies
12k
views
Comment: C: BQSR: when it is applicable?
7.6 years ago by John 13k
0
votes
0
replies
4.5k
views
Answer: A: Is there any disease mainly caused by underexpression or overexpression of some
7.6 years ago by John 13k
3
votes
0
replies
27k
views
Answer: A: Meaning of BWA-MEM MAPQ values
7.6 years ago by John 13k
0
votes
0
replies
8.8k
views
Comment: C: Amzon EC2 for bioinformatics, genomics, NGS analysis
7.7 years ago by John 13k
0
votes
0
replies
6.1k
views
Comment: C: BAM to CRAM to BAM
7.8 years ago by John 13k
11
votes
6
replies
3.0k
views
In-place writable BAM files
bgzip bam
updated 7.9 years ago by 20 • written 9.2 years ago by 13k
0
votes
0
replies
105k
views
Comment: C: samtools sorting and indexing
7.9 years ago by John 13k
0
votes
0
replies
105k
views
Comment: C: samtools sorting and indexing
7.9 years ago by John 13k
25
votes
2
replies
105k
views
Answer: A: samtools sorting and indexing
7.9 years ago by John 13k
1
vote
0
replies
6.0k
views
Comment: C: SAM file size after STAR alignment
7.9 years ago by John 13k
3
votes
1
reply
3.8k
views
Comment: C: Where and how NGS techniques are heading for the next 5 years?
7.9 years ago by John 13k
2
votes
1
reply
17k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
8.0 years ago by John 13k
0
votes
0
replies
17k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
8.0 years ago by John 13k
0
votes
1
reply
17k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
8.0 years ago by John 13k
1
vote
0
replies
17k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
8.0 years ago by John 13k
1,087 results • Page 2 of 22
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6