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0
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3
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3.4k
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Comment: Comment: For the general public seeking advice from this community
updated 14 months ago by 41k • written 8.2 years ago by 13k
0
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0
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11k
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Comment: C: Improving efficiency of awk for large files
updated 4.1 years ago by 41k • written 8.3 years ago by 13k
0
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2
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11k
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Comment: C: Improving efficiency of awk for large files
updated 4.1 years ago by 41k • written 8.3 years ago by 13k
0
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1
reply
4.2k
views
Comment: C: Design arbitrary degenerate primers (with non-binding criteria)
updated 4.1 years ago by 41k • written 8.4 years ago by 13k
0
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0
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4.2k
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Comment: C: Design arbitrary degenerate primers (with non-binding criteria)
updated 4.1 years ago by 41k • written 8.4 years ago by 13k
0
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1
reply
4.2k
views
Answer: A: Design arbitrary degenerate primers (with non-binding criteria)
updated 4.1 years ago by 41k • written 8.4 years ago by 13k
0
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0
replies
2.9k
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Comment: C: Cases where indexing is efficient for read retrieval
updated 4.1 years ago by 41k • written 8.4 years ago by 13k
0
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1
reply
6.8k
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Comment: C: Sublime Text 2: Output Error After I Installed Anaconda
updated 4.1 years ago by 41k • written 8.4 years ago by 13k
1
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1
reply
2.7k
views
Answer: Answer: All sam flags specifying first mate?
updated 11 months ago by 41k • written 8.4 years ago by 13k
3
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2
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3.1k
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Answer: A: Correlating ChIP-Seq peaks with isoform level expression
updated 4.1 years ago by 41k • written 8.5 years ago by 13k
6
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1
reply
2.5k
views
Comment: Comment: Cost of computing
updated 11 months ago by 41k • written 8.5 years ago by 13k
1
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1
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7.7k
views
Comment: C: How to reduce reads in fastq, bam, bed files in a random manner?
updated 4.1 years ago by 41k • written 9.3 years ago by 13k
1
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1
reply
2.6k
views
Comment: C: split fastq by @SEQID
updated 4.2 years ago by 41k • written 7.7 years ago by 13k
7
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2
replies
61k
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Comment: C: VCF files: Change Chromosome Notation
updated 4.4 years ago by 41k • written 7.8 years ago by 13k
2
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0
replies
18k
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Answer: A: Checking fastq is valid
updated 4.5 years ago by 41k • written 6.9 years ago by 13k
2
votes
1
reply
2.0k
views
Calling SNPs on Bisulphite Data
bissnp GATK
updated 15 months ago by 41k • written 8.0 years ago by 13k
2
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0
replies
2.3k
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Answer: A: BAM files for RRBS data in ENCODE Project
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
1
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0
replies
3.4k
views
Answer: A: Sort Sequences In A Fasta File According To The peg List
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
2
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0
replies
2.2k
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Answer: A: "Good" epigenetic histone modification ChIP-seq datasets
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
3
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0
replies
5.1k
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Answer: A: Check BAMs are complete and clean
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
0
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0
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5.1k
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Comment: C: Check BAMs are complete and clean
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
7
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6
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2.4k
views
Is there an authoritative source for optional BAM tags?
BAM Duplicates MarkDuplicates Picard
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
1
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1
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2.4k
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Answer: A: Is there an authoritative source for optional BAM tags?
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
0
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1
reply
2.4k
views
Comment: C: Is there an authoritative source for optional BAM tags?
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
0
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1
reply
9.3k
views
Comment: C: Questions about multithreading of BWA
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
2
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0
replies
23k
views
Answer: A: Check if BAM is derived from pair-end or single-end reads?
updated 5.2 years ago by 41k • written 7.5 years ago by 13k
0
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0
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6.8k
views
Comment: C: split bed file into several bed files where each region is separated of any othe
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
0
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1
reply
6.8k
views
Comment: C: split bed file into several bed files where each region is separated of any othe
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
0
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0
replies
37k
views
Answer: A: How To Get Number Of Reads In Bam File Efficiently In Python?
updated 5.2 years ago by 41k • written 8.8 years ago by 13k
2
votes
1
reply
10k
views
Answer: A: cannot import pysam. Module has no attribute error
updated 5.2 years ago by 41k • written 7.9 years ago by 13k
0
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0
replies
9.0k
views
Comment: C: BQSR: when it is applicable?
6.1 years ago by John 13k
1
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1
reply
9.0k
views
Comment: C: BQSR: when it is applicable?
6.1 years ago by John 13k
0
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0
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9.0k
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Comment: C: BQSR: when it is applicable?
6.1 years ago by John 13k
0
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0
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2.1k
views
Comment: C: How to tell if a FastQ file is a concatinate of 2 seperate illumina runs?
6.1 years ago by John 13k
1
vote
1
reply
2.1k
views
Comment: C: How to tell if a FastQ file is a concatinate of 2 seperate illumina runs?
6.1 years ago by John 13k
1
vote
2
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9.0k
views
Comment: C: BQSR: when it is applicable?
6.1 years ago by John 13k
0
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0
replies
3.6k
views
Answer: A: Is there any disease mainly caused by underexpression or overexpression of some
6.1 years ago by John 13k
3
votes
0
replies
21k
views
Answer: A: Meaning of BWA-MEM MAPQ values
6.1 years ago by John 13k
0
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0
replies
7.1k
views
Comment: C: Amzon EC2 for bioinformatics, genomics, NGS analysis
6.3 years ago by John 13k
0
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0
replies
5.4k
views
Comment: C: BAM to CRAM to BAM
6.4 years ago by John 13k
11
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6
replies
2.5k
views
In-place writable BAM files
bgzip bam
updated 6.4 years ago by 20 • written 7.7 years ago by 13k
0
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0
replies
92k
views
Comment: C: samtools sorting and indexing
6.4 years ago by John 13k
0
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0
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92k
views
Comment: C: samtools sorting and indexing
6.4 years ago by John 13k
25
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2
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92k
views
Answer: A: samtools sorting and indexing
6.4 years ago by John 13k
1
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0
replies
5.0k
views
Comment: C: SAM file size after STAR alignment
6.4 years ago by John 13k
3
votes
1
reply
2.6k
views
Comment: C: Where and how NGS techniques are heading for the next 5 years?
6.5 years ago by John 13k
2
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1
reply
13k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
6.5 years ago by John 13k
0
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0
replies
13k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
6.5 years ago by John 13k
0
votes
1
reply
13k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
6.5 years ago by John 13k
1
vote
0
replies
13k
views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
6.5 years ago by John 13k
1,087 results • Page 2 of 22
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