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2
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2
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739
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Answer: Answer: Chipseq visualization how to draw the figure
19 months ago by Chirag Nepal ★ 2.3k
0
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0
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43k
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Comment: Comment: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
19 months ago by Chirag Nepal ★ 2.3k
5
votes
4
replies
2.5k
views
Predict if the mutation is activating or deactivating
SNV INDEL Activating Deactivating mutations
updated 2.2 years ago by 20 • written 6.5 years ago by ★ 2.3k
0
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0
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1.6k
views
Comment: C: counting number of CpGs that are methylated and unmethylated in a read of whole
2.4 years ago by Chirag Nepal ★ 2.3k
4
votes
2
replies
1.2k
views
Mapping variable read length
alignment
updated 2.5 years ago by 20 • written 5.1 years ago by ★ 2.3k
0
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0
replies
38k
views
Comment: C: Bam File: Change Chromosome Notation
updated 2.6 years ago by 38k • written 7.5 years ago by ★ 2.3k
0
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1
reply
774
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Comment: C: Find HBV integration sites in human genome.
3.0 years ago by Chirag Nepal ★ 2.3k
0
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3
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774
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Find HBV integration sites in human genome.
ChimericReads HumanVirusGenome CAGE-seq
updated 3.0 years ago by 153k • written 3.0 years ago by ★ 2.3k
0
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0
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545
views
Comment: C: Mapping reads on ENCODEBlackListedRegion
3.0 years ago by Chirag Nepal ★ 2.3k
1
vote
2
replies
545
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Mapping reads on ENCODEBlackListedRegion
CAGE-seq ENCODEBlackListedRegion
3.0 years ago by Chirag Nepal ★ 2.3k
1
vote
0
replies
47k
views
Comment: C: Adding Read Groups To Bam Files
updated 3.0 years ago by 38k • written 8.4 years ago by ★ 2.3k
1
vote
4
replies
903
views
Visualize paired end reads
RNA-Seq Paired-end alignment
updated 3.1 years ago by ▴ 170 • written 3.1 years ago by ★ 2.3k
0
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0
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903
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Comment: C: Visualize paired end reads
3.1 years ago by Chirag Nepal ★ 2.3k
4
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1
reply
6.7k
views
Answer: A: How to find CpG island shore?
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 2.3k
0
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0
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13k
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Comment: C: Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.3k
0
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0
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1.7k
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Comment: C: How should I interpret these pairs of mapped CAGE reads differing in position by
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.3k
0
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0
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2.1k
views
Comment: C: Is the expression value of miRNA precursore is equivalent to it's corresponding
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.3k
1
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1
reply
1.6k
views
Answer: A: Identify miRNA from deep RNA sequencing
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.3k
1
vote
0
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4.9k
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Answer: A: FastQC of small rna-seq
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
0
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1
reply
13k
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Comment: C: Plotting Reads Around Tss
updated 3.3 years ago by 38k • written 8.6 years ago by ★ 2.3k
0
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0
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2.0k
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Answer: A: Finding uORFs in non-model organisms
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
0
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0
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2.2k
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Answer: A: need to identify CDS (translation) for gene models predicted by Cufflinks and St
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
4
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1
reply
2.6k
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Answer: A: CAGE processing (from BAM to expression values per Gene/Isoform)
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
1
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1
reply
4.1k
views
Comment: C: promoter position estimation
updated 3.3 years ago by 38k • written 7.3 years ago by ★ 2.3k
1
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1
reply
4.1k
views
Answer: A: promoter position estimation
updated 3.3 years ago by 38k • written 7.3 years ago by ★ 2.3k
0
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1
reply
2.1k
views
Comment: C: Position of SNPs with respect to codon
updated 3.3 years ago by 38k • written 7.3 years ago by ★ 2.3k
0
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0
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1.9k
views
Answer: A: Why there are some genes have a same transcription start position?
updated 3.3 years ago by 38k • written 7.3 years ago by ★ 2.3k
0
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1
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7.1k
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Comment: C: Data Set Suitable For Comparing Wgs, Exome, And Rna-Seq Data Generated From The
updated 3.3 years ago by 38k • written 8.5 years ago by ★ 2.3k
0
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0
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3.0k
views
Comment: C: Plotting Coverage - Strand specification
updated 3.3 years ago by 38k • written 7.3 years ago by ★ 2.3k
1
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1
reply
9.8k
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Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 3.3 years ago by 38k • written 7.4 years ago by ★ 2.3k
0
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1
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9.8k
views
Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 3.3 years ago by 38k • written 7.4 years ago by ★ 2.3k
0
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1
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9.8k
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Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 3.3 years ago by 38k • written 7.4 years ago by ★ 2.3k
0
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0
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3.9k
views
Comment: C: What causes tophat_reports error?
updated 3.3 years ago by 38k • written 7.4 years ago by ★ 2.3k
0
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1
reply
2.5k
views
Comment: C: breakdancer - cfg creation and chi square problem
updated 3.3 years ago by 38k • written 7.4 years ago by ★ 2.3k
1
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1
reply
2.8k
views
Answer: A: ChIP-seq blacklisted regions (mouse)
updated 3.3 years ago by 38k • written 7.4 years ago by ★ 2.3k
0
votes
1
reply
43k
views
Comment: A: Any Method Of Converting Bigwig File Format Into Bed Format?
updated 3.4 years ago by 38k • written 9.7 years ago by ★ 2.3k
0
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0
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24k
views
Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 3.4 years ago by 38k • written 8.4 years ago by ★ 2.3k
0
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1
reply
24k
views
Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 3.4 years ago by 38k • written 8.4 years ago by ★ 2.3k
0
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1
reply
24k
views
Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 3.4 years ago by 38k • written 8.4 years ago by ★ 2.3k
0
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1
reply
3.2k
views
Comment: C: Varscan somatic error
updated 3.5 years ago by 38k • written 8.6 years ago by ★ 2.3k
0
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1
reply
3.2k
views
Comment: C: Varscan somatic error
updated 3.5 years ago by 38k • written 8.6 years ago by ★ 2.3k
0
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1
reply
1.6k
views
Answer: A: Edit distance between microRNAs
updated 3.5 years ago by 38k • written 8.7 years ago by ★ 2.3k
1
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0
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2.3k
views
Comment: C: Can we combine adjacent peaks in ATAC-Seq fata
3.8 years ago by Chirag Nepal ★ 2.3k
0
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5
replies
2.1k
views
Position of SNPs with respect to codon
Codon SNP tRNA
updated 7 months ago by 38k • written 7.3 years ago by ★ 2.3k
0
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0
replies
29k
views
Comment: C: Drug to Target/Gene/Protein Interaction Databases
4.2 years ago by Chirag Nepal ★ 2.3k
0
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0
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1.2k
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Comment: C: Identifying pri-microRNA sequence from microRNA sequence
4.3 years ago by Chirag Nepal ★ 2.3k
0
votes
0
replies
912
views
Virmid mutation calling, error
Virmid Mutation
updated 4.6 years ago by 38k • written 5.1 years ago by ★ 2.3k
1
vote
1
reply
1.3k
views
KEGG pathway file for running genome music path-scan
MuSic KEGG
4.8 years ago by Chirag Nepal ★ 2.3k
0
votes
2
replies
1.8k
views
Determine whether it is MSI (micro satellite instability) or not
MSI msisensors
updated 4.8 years ago by ▴ 60 • written 4.8 years ago by ★ 2.3k
0
votes
1
reply
2.1k
views
Comment: C: How to merge chr+strand+coordinate+score from multiple files?
4.8 years ago by Chirag Nepal ★ 2.3k
305 results • Page 1 of 7
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