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2
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Answer: Answer: Single cell visulaisation webtool
15 months ago by antonioggsousa 3.2k
3
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1
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2.2k
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Answer: Answer: Can't do runPCA after merging a splited Seurat object before UMAP
15 months ago by antonioggsousa 3.2k
3
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1
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2.4k
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Answer: Answer: Should I scale all genes in single cell Seurat?
15 months ago by antonioggsousa 3.2k
0
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0
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1.5k
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Answer: Answer: Monocle3 transition to seurat
17 months ago by antonioggsousa 3.2k
1
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0
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808
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Answer: Answer: Using DADA2 for finding viral sequence variants
17 months ago by antonioggsousa 3.2k
0
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1
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2.1k
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Answer: Answer: Cacoa with Seurat analysis
17 months ago by antonioggsousa 3.2k
9
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3
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4.5k
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Answer: Answer: When should I NOT apply batch correction for my single-cell RNAseq data?
updated 17 months ago by 45k • written 17 months ago by 3.2k
1
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1
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2.0k
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Answer: Answer: 18S taxonomy assignment SILVA database formatting
17 months ago by antonioggsousa 3.2k
2
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1
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4.4k
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Answer: Answer: DoHeatmap Seurat Edit Legend
2.2 years ago by antonioggsousa 3.2k
2
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1
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3.1k
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Answer: Answer: How to get parameter for cluster in scCATCH tool
2.5 years ago by antonioggsousa 3.2k
0
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1
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2.4k
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Answer: Answer: Are there any tools that automatically detect where to truncate forward and reve
2.6 years ago by antonioggsousa 3.2k
1
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1
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1.6k
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Answer: Answer: Is it required for all sequences to be same length when clustering OTUs in metag
2.6 years ago by antonioggsousa 3.2k
3
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1
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1.4k
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Answer: Answer: Does Seurat have Pearson Residual (Poisson) normalization method?
2.6 years ago by antonioggsousa 3.2k
2
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3
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10k
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Answer: Answer: Error in Read10X(data.dir
3.3 years ago by antonioggsousa 3.2k
2
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1
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1.9k
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Answer: Answer: Jaccard distance matric in Phyloseq
3.3 years ago by antonioggsousa 3.2k
3
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1
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3.1k
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Answer: Answer: STAR alignment in a full directory
3.3 years ago by antonioggsousa 3.2k
2
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1
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2.7k
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Answer: Answer: How to create an OTU table out of phyla abundance?
3.9 years ago by antonioggsousa 3.2k
1
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1
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3.0k
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Answer: Answer: Which formula of Bray-Curtis beta diversity index should be used for microbiome
4.0 years ago by antonioggsousa 3.2k
3
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1
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2.6k
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Answer: Answer: How can I get the Shannon and observed alpha diversity Index value?
4.0 years ago by antonioggsousa 3.2k
1
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1
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3.0k
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Answer: A: Extracting group-specific combinations from distance matrix
4.1 years ago by antonioggsousa 3.2k
4
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1
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2.6k
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Answer: C: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
4.2 years ago by antonioggsousa 3.2k
2
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1
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2.4k
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Answer: C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
4.2 years ago by antonioggsousa 3.2k
4
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2
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1.6k
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Answer: C: separate_rows, but keep related ones together
4.2 years ago by antonioggsousa 3.2k
5
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1
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2.2k
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Answer: A: Trimmomatic MINLEN option doesn't work
4.2 years ago by antonioggsousa 3.2k
0
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1
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3.5k
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Answer: A: Greengenes OTU ID
4.3 years ago by antonioggsousa 3.2k
3
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1
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1.8k
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Answer: C: EnhancedVolcano custom color variables by log2FC and p-value
updated 4.3 years ago by 89k • written 4.3 years ago by 3.2k
5
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1
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3.3k
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Answer: C: Problem when running FeatureCounts
4.3 years ago by antonioggsousa 3.2k
1
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2
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1.0k
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Answer: A: Illumina technology output, 16S amplicon
4.3 years ago by antonioggsousa 3.2k
0
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1
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1.7k
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Answer: A: Translation from fasta file which contains 6 sequences
4.3 years ago by antonioggsousa 3.2k
2
votes
1
reply
19k
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Answer: A: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
4.3 years ago by antonioggsousa 3.2k
0
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1
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2.4k
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Answer: A: Do you NEED to bin a metagenome into MAGs?
4.3 years ago by antonioggsousa 3.2k
1
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1
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2.3k
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Answer: A: How to deal with techinical replicates in 16S amplicon sequencing data/OTU table
4.3 years ago by antonioggsousa 3.2k
2
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0
replies
1.6k
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Answer: A: what is environmental sample (Taxonomy ID: 61964) in NCBI?
4.4 years ago by antonioggsousa 3.2k
0
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1
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2.0k
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Answer: A: Preparing 16S gene amplicon (metagenomic) sequencing data for submission to ENA
4.4 years ago by antonioggsousa 3.2k
0
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0
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4.2k
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Answer: A: questions about qiime2 manifest file; error message: semantic type SampleData[Se
4.4 years ago by antonioggsousa 3.2k
2
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1
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3.1k
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Answer: A: SparCC repository gone
4.4 years ago by antonioggsousa 3.2k
1
vote
0
replies
816
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Answer: A: Appending output to a vector in R
4.5 years ago by antonioggsousa 3.2k
2
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1
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1.5k
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Answer: A: do we clone sequences while performing shotgun sequencing on microbiome?
4.5 years ago by antonioggsousa 3.2k
0
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0
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1.1k
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Answer: C: Does anyone know/would be willing to give me a guide on how to do ChIP-Seq data
4.5 years ago by antonioggsousa 3.2k
8
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0
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5.7k
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Answer: A: [RNA-Seq] STAR vs Subread
4.5 years ago by antonioggsousa 3.2k
0
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0
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1.0k
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Answer: A: running HISAT2 with multiple samples
4.5 years ago by antonioggsousa 3.2k
0
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0
replies
846
views
Answer: A: Add Both Legends to a Plot
4.6 years ago by antonioggsousa 3.2k
3
votes
1
reply
2.9k
views
Answer: A: change the color of the plot
4.6 years ago by antonioggsousa 3.2k
5
votes
1
reply
14k
views
Answer: A: saving ggplotly as html
4.6 years ago by antonioggsousa 3.2k
12
votes
1
reply
30k
views
Answer: A: Adding p value to Vlnplot in Seurat
4.6 years ago by antonioggsousa 3.2k
0
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1
reply
2.4k
views
Answer: A: How to fix extreme outliers not picked up by DESeq2?
4.6 years ago by antonioggsousa 3.2k
4
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1
reply
2.4k
views
Answer: A: Identity of the RidgePlot in single cell
4.6 years ago by antonioggsousa 3.2k
2
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0
replies
2.6k
views
Answer: A: Workflow/pipeline for detecting isoforms/alternative splicing
4.6 years ago by antonioggsousa 3.2k
4
votes
1
reply
8.6k
views
Answer: A: Top Variable DEGs into a heatmap
4.6 years ago by antonioggsousa 3.2k
1
vote
1
reply
1.9k
views
Answer: A: Installation of libraries as non-root user in server without internet connection
4.6 years ago by antonioggsousa 3.2k
101 results • Page 1 of 3
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