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Does it make sense to limit insert size when mapping on transcriptome?
RNA-seq transcriptome
updated 2.6 years ago by 45k • written 8.1 years ago by ★ 3.7k
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1
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2.5k
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Comment: C: refseq transcriptome annotation
8.1 years ago by Matteo Schiavinato ★ 3.7k
2
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4.4k
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Comment: C: Rename the fasta entries in Unix or R
8.1 years ago by Matteo Schiavinato ★ 3.7k
3
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1
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9.3k
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Answer: A: hisat2 parameters for paired end and single end reads from same samples
8.1 years ago by Matteo Schiavinato ★ 3.7k
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2
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5.4k
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Comment: C: Very high alignment rate with bowtie2
8.1 years ago by Matteo Schiavinato ★ 3.7k
1
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0
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4.4k
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Answer: A: Rename the fasta entries in Unix or R
8.1 years ago by Matteo Schiavinato ★ 3.7k
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0
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1.8k
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Answer: A: awesome cancer genomics
8.1 years ago by Matteo Schiavinato ★ 3.7k
2
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3
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3.0k
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SAM Flags for illumina paired-end reads mapped on transcriptome
sam flags transcriptome alignment paired-end
updated 8.1 years ago by 105k • written 8.1 years ago by ★ 3.7k
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3.1k
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Comment: C: what to do when adjusted p-values are not acceptable in RNASeq?
8.1 years ago by Matteo Schiavinato ★ 3.7k
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3.9k
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Comment: C: Reads at position using samtools mpileup
8.2 years ago by Matteo Schiavinato ★ 3.7k
2
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0
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1.1k
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Subgenomes separation in hybrid species
Assembly genome sequencing SNP RNA-Seq
8.2 years ago by Matteo Schiavinato ★ 3.7k
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0
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18k
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Comment: C: FASTA file into excel file format?
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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0
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18k
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Comment: C: FASTA file into excel file format?
8.2 years ago by Matteo Schiavinato ★ 3.7k
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0
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9.1k
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Comment: C: PSIPRED, how to install and make it work?
8.2 years ago by Matteo Schiavinato ★ 3.7k
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0
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11k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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6.4k
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Comment: C: Genome Browser suggestions
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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6.4k
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Comment: C: Genome Browser suggestions
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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11k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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11k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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0
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3.5k
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Comment: C: How to count reads mapped to multiple loci?
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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3.2k
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Comment: C: Creation of Transcript expression file
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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11k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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3.2k
views
Comment: C: Creation of Transcript expression file
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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3.2k
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Comment: C: Creation of Transcript expression file
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
reply
11k
views
Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
reply
3.2k
views
Comment: C: Creation of Transcript expression file
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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1
reply
4.8k
views
Comment: C: Best way to compare expression values between two groups
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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1
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9.2k
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Comment: C: Calculating FPKM from HTSeq counts table
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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1
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4.8k
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Comment: C: Best way to compare expression values between two groups
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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1.9k
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Comment: C: Alignment of two different file format
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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1.5k
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Comment: C: Cannot calculate order statistic on object with 3 columns in R
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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1
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2.9k
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Answer: A: Locate short DNA sequence from fasta file
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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2.6k
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Answer: A: BAM Index Chunks
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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0
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7.7k
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Comment: C: Python Regular Expressions to extract the transcript ID from lines of GTF file
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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7.7k
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Answer: A: Python Regular Expressions to extract the transcript ID from lines of GTF file
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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3.5k
views
Answer: A: How to count reads mapped to multiple loci?
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
replies
6.4k
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Comment: C: Genome Browser suggestions
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
reply
6.4k
views
Comment: C: Genome Browser suggestions
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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2
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6.4k
views
Comment: C: Genome Browser suggestions
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
reply
6.4k
views
Comment: C: Genome Browser suggestions
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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2.3k
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Comment: C: How to identify the SiRNA abundance from transcriptome data
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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2.3k
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Comment: C: How to identify the SiRNA abundance from transcriptome data
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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2.0k
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Comment: C: Difficulty in installing MAKER
8.2 years ago by Matteo Schiavinato ★ 3.7k
1
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1
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35k
views
Comment: C: GT and GL fields in VCF file
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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4.5k
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Comment: C: calculate RPKM from read count and gff by galaxy
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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0
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4.7k
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Comment: C: How to Fix Error in snpeff
8.2 years ago by Matteo Schiavinato ★ 3.7k
48
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4
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29k
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Best way to compare two samples in a VCF file
VCF Variant Genotype Comparison SNP
updated 2.2 years ago by 45k • written 8.9 years ago by ★ 3.7k
0
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0
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2.3k
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Answer: A: To screen for a good aligner
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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1
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4.5k
views
Answer: A: calculate RPKM from read count and gff by galaxy
8.2 years ago by Matteo Schiavinato ★ 3.7k
0
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2
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4.7k
views
Comment: C: How to Fix Error in snpeff
8.2 years ago by Matteo Schiavinato ★ 3.7k
600 results • Page 7 of 12
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