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Comment: Comment: clusterprofiler: How to extract genes of a specific GO-term/pathway
9 months ago by FatihSarigol ▴ 250
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2.2k
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Answer: Answer: How to change the default P value and FDR cutoff in DiffBind
2.1 years ago by FatihSarigol ▴ 250
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1
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5.1k
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Answer: Answer: Software recommendations for synteny analysis
2.6 years ago by FatihSarigol ▴ 250
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17k
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Comment: Comment: gff3 to CDS fasta
2.8 years ago by FatihSarigol ▴ 250
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17k
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Answer: Answer: gff3 to CDS fasta
2.8 years ago by FatihSarigol ▴ 250
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1
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48k
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Comment: C: How do you cite a tool that doesn't have a publication?
3.6 years ago by FatihSarigol ▴ 250
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60k
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Answer: Answer: Tool to generate proportional Venn Diagrams?
updated 24 months ago by 43k • written 3.8 years ago by ▴ 250
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1
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1.2k
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Comment: C: How to identify the bp distance of blast results to closest genes in a genome
3.8 years ago by FatihSarigol ▴ 250
7
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4
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1.2k
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How to identify the bp distance of blast results to closest genes in a genome
blast genome sequence
3.8 years ago by FatihSarigol ▴ 250
9
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0
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294k
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Answer: A: Understanding up and down regulated genes from LOG2 foldchange or foldchange
updated 4.3 years ago by 43k • written 6.8 years ago by ▴ 250
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7.4k
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Comment: C: vcftools Warning: Expected at least 2 parts in FORMAT entry
4.9 years ago by FatihSarigol ▴ 250
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1
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7.4k
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Comment: C: vcftools Warning: Expected at least 2 parts in FORMAT entry
4.9 years ago by FatihSarigol ▴ 250
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0
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1.8k
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Answer: A: Split fai (fasta index) or VCF into N nearly equal total length chunks
5.1 years ago by FatihSarigol ▴ 250
4
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6
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1.8k
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Split fai (fasta index) or VCF into N nearly equal total length chunks
genome faidx
5.1 years ago by FatihSarigol ▴ 250
0
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1
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1.8k
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Comment: C: Split fai (fasta index) or VCF into N nearly equal total length chunks
5.1 years ago by FatihSarigol ▴ 250
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0
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1.8k
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Comment: C: Split fai (fasta index) or VCF into N nearly equal total length chunks
5.1 years ago by FatihSarigol ▴ 250
1
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0
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53k
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Comment: C: How to extract specific chromosome from vcf file
5.1 years ago by FatihSarigol ▴ 250
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0
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3.0k
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Comment: C: Convert from PSL to MAF
5.2 years ago by FatihSarigol ▴ 250
1
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0
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11k
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Answer: A: Mismatch and Indel statistics from BAM/SAM file
5.3 years ago by FatihSarigol ▴ 250
0
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1
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8.7k
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Comment: C: Substituting Snps On Reference Genome Assemblies
5.7 years ago by FatihSarigol ▴ 250
1
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1
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2.1k
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Comment: C: Samtools faidx non-zero exit status 217
5.9 years ago by FatihSarigol ▴ 250
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0
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14k
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Comment: C: Extracting allel, Genotype from VCF file
6.0 years ago by FatihSarigol ▴ 250
1
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1.1k
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Comment: C: any tool to join reads regardless of overlap?
6.0 years ago by FatihSarigol ▴ 250
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0
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6.1k
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Comment: C: BWA MEM -T option. What does really do and how?
6.0 years ago by FatihSarigol ▴ 250
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0
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31k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.0 years ago by FatihSarigol ▴ 250
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0
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5.9k
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Comment: C: LOSITAN - illegal URL redirect
6.0 years ago by FatihSarigol ▴ 250
2
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0
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2.7k
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Answer: A: How does FASTQ format show a diploid sequence.
6.1 years ago by FatihSarigol ▴ 250
1
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1
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5.9k
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Comment: C: LOSITAN - illegal URL redirect
6.1 years ago by FatihSarigol ▴ 250
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0
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1.4k
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Comment: C: Problem launching LOSITAN
6.1 years ago by FatihSarigol ▴ 250
0
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1
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8.7k
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Answer: A: Substituting Snps On Reference Genome Assemblies
6.2 years ago by FatihSarigol ▴ 250
0
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0
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36k
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Answer: A: New Fasta Sequence From Reference Fasta And Variant Calls File?
6.2 years ago by FatihSarigol ▴ 250
3
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1
reply
1.4k
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Fetch Phenotypes from Orthologues and GO terms for a NonModel organism Gene Set
ensembl biomart gene ontology
updated 6.6 years ago by 23k • written 6.6 years ago by ▴ 250
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0
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2.9k
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Comment: C: problems to install Lositan with Java because it is signed using MD5
6.7 years ago by FatihSarigol ▴ 250
0
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0
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30k
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Answer: A: Merge Paired-End Reads
6.7 years ago by FatihSarigol ▴ 250
0
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0
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8.7k
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Comment: C: Substituting Snps On Reference Genome Assemblies
6.7 years ago by FatihSarigol ▴ 250
0
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0
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8.7k
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Comment: C: Substituting Snps On Reference Genome Assemblies
6.7 years ago by FatihSarigol ▴ 250
1
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1
reply
1.3k
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Subselecting populations make Lositan freeze
lositan
6.7 years ago by FatihSarigol ▴ 250
0
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0
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1.7k
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Comment: C: Lositan freezing after starting the analysis
6.7 years ago by FatihSarigol ▴ 250
3
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0
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10k
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Answer: A: Kallisto New RNA-seq quantification method discussion
6.8 years ago by FatihSarigol ▴ 250
0
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0
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36k
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Comment: C: New Fasta Sequence From Reference Fasta And Variant Calls File?
6.8 years ago by FatihSarigol ▴ 250
0
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0
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6.1k
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Comment: C: nucleotide divergency (--site-pi) in VCF tools
7.1 years ago by FatihSarigol ▴ 250
1
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1
reply
43k
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Answer: A: How to filter vcf file on minimum genotype depth and quality for each sample
7.2 years ago by FatihSarigol ▴ 250
0
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0
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3.1k
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Comment: C: Converting Cdd Pssm Ids To Pdb Or Interpro Id
7.2 years ago by FatihSarigol ▴ 250
1
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2
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2.3k
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Aligning Reads with Overhangs on the Ends (Edges) of Reference Contigs or Scaffolds
alignment SNP non-model mismatch Assembly
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 250
0
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0
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2.3k
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Comment: C: Aligning Reads with Overhangs on the Ends (Edges) of Reference Contigs or Scaffo
7.4 years ago by FatihSarigol ▴ 250
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