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Answer: Answer: How to change the default P value and FDR cutoff in DiffBind
13 months ago by FatihSarigol ▴ 250
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3.1k
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Answer: Answer: Software recommendations for synteny analysis
18 months ago by FatihSarigol ▴ 250
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14k
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Comment: Comment: gff3 to CDS fasta
20 months ago by FatihSarigol ▴ 250
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14k
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Answer: Answer: gff3 to CDS fasta
20 months ago by FatihSarigol ▴ 250
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42k
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Comment: C: How do you cite a tool that doesn't have a publication?
2.6 years ago by FatihSarigol ▴ 250
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57k
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Answer: Answer: Tool to generate proportional Venn Diagrams?
updated 11 months ago by 38k • written 2.7 years ago by ▴ 250
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827
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Comment: C: How to identify the bp distance of blast results to closest genes in a genome
2.7 years ago by FatihSarigol ▴ 250
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4
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827
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How to identify the bp distance of blast results to closest genes in a genome
blast genome sequence
2.7 years ago by FatihSarigol ▴ 250
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268k
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Answer: A: Understanding up and down regulated genes from LOG2 foldchange or foldchange
updated 3.2 years ago by 38k • written 5.8 years ago by ▴ 250
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5.9k
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Comment: C: vcftools Warning: Expected at least 2 parts in FORMAT entry
3.8 years ago by FatihSarigol ▴ 250
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1
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5.9k
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Comment: C: vcftools Warning: Expected at least 2 parts in FORMAT entry
3.8 years ago by FatihSarigol ▴ 250
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1.3k
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Answer: A: Split fai (fasta index) or VCF into N nearly equal total length chunks
4.0 years ago by FatihSarigol ▴ 250
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6
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1.3k
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Split fai (fasta index) or VCF into N nearly equal total length chunks
genome faidx
4.0 years ago by FatihSarigol ▴ 250
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1
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1.3k
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Comment: C: Split fai (fasta index) or VCF into N nearly equal total length chunks
4.0 years ago by FatihSarigol ▴ 250
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1.3k
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Comment: C: Split fai (fasta index) or VCF into N nearly equal total length chunks
4.0 years ago by FatihSarigol ▴ 250
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0
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42k
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Comment: C: How to extract specific chromosome from vcf file
4.0 years ago by FatihSarigol ▴ 250
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2.7k
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Comment: C: Convert from PSL to MAF
4.1 years ago by FatihSarigol ▴ 250
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8.8k
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Answer: A: Mismatch and Indel statistics from BAM/SAM file
4.3 years ago by FatihSarigol ▴ 250
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1
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7.8k
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Comment: C: Substituting Snps On Reference Genome Assemblies
4.7 years ago by FatihSarigol ▴ 250
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1
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1.7k
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Comment: C: Samtools faidx non-zero exit status 217
4.9 years ago by FatihSarigol ▴ 250
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10k
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Comment: C: Extracting allel, Genotype from VCF file
4.9 years ago by FatihSarigol ▴ 250
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909
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Comment: C: any tool to join reads regardless of overlap?
4.9 years ago by FatihSarigol ▴ 250
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5.6k
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Comment: C: BWA MEM -T option. What does really do and how?
5.0 years ago by FatihSarigol ▴ 250
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25k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
5.0 years ago by FatihSarigol ▴ 250
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5.2k
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Comment: C: LOSITAN - illegal URL redirect
5.0 years ago by FatihSarigol ▴ 250
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2.3k
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Answer: A: How does FASTQ format show a diploid sequence.
5.0 years ago by FatihSarigol ▴ 250
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1
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5.2k
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Comment: C: LOSITAN - illegal URL redirect
5.1 years ago by FatihSarigol ▴ 250
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0
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1.2k
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Comment: C: Problem launching LOSITAN
5.1 years ago by FatihSarigol ▴ 250
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1
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7.8k
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Answer: A: Substituting Snps On Reference Genome Assemblies
5.1 years ago by FatihSarigol ▴ 250
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0
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34k
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Answer: A: New Fasta Sequence From Reference Fasta And Variant Calls File?
5.1 years ago by FatihSarigol ▴ 250
3
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1
reply
1.2k
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Fetch Phenotypes from Orthologues and GO terms for a NonModel organism Gene Set
ensembl biomart gene ontology
updated 5.5 years ago by 23k • written 5.6 years ago by ▴ 250
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2.6k
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Comment: C: problems to install Lositan with Java because it is signed using MD5
5.6 years ago by FatihSarigol ▴ 250
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0
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28k
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Answer: A: Merge Paired-End Reads
5.6 years ago by FatihSarigol ▴ 250
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0
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7.8k
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Comment: C: Substituting Snps On Reference Genome Assemblies
5.6 years ago by FatihSarigol ▴ 250
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0
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7.8k
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Comment: C: Substituting Snps On Reference Genome Assemblies
5.6 years ago by FatihSarigol ▴ 250
1
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1
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1.2k
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Subselecting populations make Lositan freeze
lositan
5.6 years ago by FatihSarigol ▴ 250
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0
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1.6k
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Comment: C: Lositan freezing after starting the analysis
5.7 years ago by FatihSarigol ▴ 250
3
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0
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9.3k
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Answer: A: Kallisto New RNA-seq quantification method discussion
5.8 years ago by FatihSarigol ▴ 250
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0
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34k
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Comment: C: New Fasta Sequence From Reference Fasta And Variant Calls File?
5.8 years ago by FatihSarigol ▴ 250
0
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0
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5.5k
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Comment: C: nucleotide divergency (--site-pi) in VCF tools
6.0 years ago by FatihSarigol ▴ 250
1
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1
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36k
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Answer: A: How to filter vcf file on minimum genotype depth and quality for each sample
6.1 years ago by FatihSarigol ▴ 250
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0
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2.8k
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Comment: C: Converting Cdd Pssm Ids To Pdb Or Interpro Id
6.1 years ago by FatihSarigol ▴ 250
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2
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2.1k
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Aligning Reads with Overhangs on the Ends (Edges) of Reference Contigs or Scaffolds
alignment SNP non-model mismatch Assembly
updated 6.3 years ago by 20 • written 6.3 years ago by ▴ 250
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2.1k
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Comment: C: Aligning Reads with Overhangs on the Ends (Edges) of Reference Contigs or Scaffo
6.3 years ago by FatihSarigol ▴ 250
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