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67
votes
15
replies
34k
views
14 follow
Rna-Seq Pipeline
pipeline
next-gen-sequencing
rna
rna-seq
updated 18 months ago by
Ram
44k • written 14.6 years ago by
brentp
24k
328
votes
54
replies
68k
views
45 follow
What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
genome
visualization
updated 13 months ago by
Ram
44k • written 14.7 years ago by
brentp
24k
8
votes
2
replies
2.5k
views
How to run vg giraffe for sv genotyping?
vg
updated 3.4 years ago by
Jouni Sirén
▴ 510 • written 3.4 years ago by
brentp
24k
102
votes
44
replies
9.7k
views
22 follow
What Are Numbers Every Bioinformatician Should Know?
knowledge
career
updated 21 months ago by
Ram
44k • written 11.3 years ago by
brentp
24k
4
votes
2
replies
16k
views
Comment:
C: Samtools Filter Reads Cigar Field
updated 4.0 years ago by
Ram
44k • written 11.3 years ago by
brentp
24k
3
votes
0
replies
10k
views
Answer:
C: Changing Chromosome Notation On Vcf
updated 4.3 years ago by
zx8754
12k • written 11.1 years ago by
brentp
24k
6
votes
1
reply
67k
views
Comment:
C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by
Ram
44k • written 12.6 years ago by
brentp
24k
9
votes
1
reply
67k
views
Comment:
C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by
Ram
44k • written 12.6 years ago by
brentp
24k
6
votes
0
replies
67k
views
Answer:
A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by
Ram
44k • written 12.5 years ago by
brentp
24k
78
votes
2
replies
67k
views
Answer:
A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by
Ram
44k • written 13.7 years ago by
brentp
24k
13
votes
0
replies
67k
views
Comment:
C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by
Ram
44k • written 13.7 years ago by
brentp
24k
4
votes
1
reply
148k
views
Answer:
A: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
updated 4.7 years ago by
Ram
44k • written 10.3 years ago by
brentp
24k
0
votes
0
replies
6.6k
views
Comment:
C: RNA-seq analysis for Ion Proton Transcriptome data - tophat2 error
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
brentp
24k
1
vote
1
reply
3.5k
views
Answer:
A: Adjusting for Age in GWAS where case and control are not age matched.
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
brentp
24k
4
votes
0
replies
2.1k
views
Answer:
A: Rearrange a table
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
brentp
24k
0
votes
0
replies
2.9k
views
Answer:
A: csfasta malformed qualities
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
brentp
24k
9
votes
2
replies
12k
views
Answer:
A: Bwa-Meth: Align And Tabulate Bs-Seq Reads
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
brentp
24k
1
vote
0
replies
5.1k
views
Answer:
A: Fast search for many patterns
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
brentp
24k
4
votes
0
replies
6.0k
views
Answer:
A: EMBOSS Needle: Read sequences from stdin
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
brentp
24k
3
votes
1
reply
2.4k
views
Answer:
C: equivalent of bash eval in R
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
brentp
24k
4
votes
2
replies
5.5k
views
Answer:
A: Which tool to use to run a PCA on a microarray dataset to select the most releva
updated 5.0 years ago by
Ram
44k • written 10.6 years ago by
brentp
24k
1
vote
1
reply
7.2k
views
Answer:
A: How To Calculate Power For Genome Wide Methylation Array Data, Like Illumina 27K
updated 5.0 years ago by
Ram
44k • written 11.1 years ago by
brentp
24k
3
votes
0
replies
6.4k
views
Comment:
C: Transcription Factors <--> Regulated Genes Database
updated 5.0 years ago by
Ram
44k • written 11.3 years ago by
brentp
24k
4
votes
2
replies
7.3k
views
Answer:
A: Interleaving Records From More Than One Fasta File
updated 5.0 years ago by
Ram
44k • written 11.7 years ago by
brentp
24k
2
votes
1
reply
4.1k
views
Answer:
A: Is There A Rare Variant Burden Test That Corrects For Gene Length?
updated 5.0 years ago by
Ram
44k • written 11.7 years ago by
brentp
24k
0
votes
0
replies
9.7k
views
Comment:
C: Python: Finding Gene Closest To A Given Location
updated 5.0 years ago by
Ram
44k • written 12.1 years ago by
brentp
24k
3
votes
1
reply
9.7k
views
Answer:
A: Python: Finding Gene Closest To A Given Location
updated 5.0 years ago by
Ram
44k • written 12.1 years ago by
brentp
24k
0
votes
0
replies
6.5k
views
Comment:
C: How To Obtain Intron And Utr Info From Gff File?
updated 5.0 years ago by
Ram
44k • written 13.0 years ago by
brentp
24k
0
votes
0
replies
23k
views
Comment:
C: Bed File With Introns Only
updated 5.0 years ago by
Ram
44k • written 13.1 years ago by
brentp
24k
0
votes
0
replies
2.0k
views
Comment:
C: Intersection Of Processed Microarray Data: P-Values Commensurability
updated 5.0 years ago by
Ram
44k • written 13.2 years ago by
brentp
24k
7
votes
5
replies
13k
views
Answer:
A: Get Snp Position From A Python Interface.
updated 5.0 years ago by
Ram
44k • written 12.0 years ago by
brentp
24k
1
vote
0
replies
14k
views
Comment:
C: Chromosome Plot In R
updated 5.0 years ago by
Ram
44k • written 13.4 years ago by
brentp
24k
1
vote
4
replies
21k
views
Answer:
A: Probability Of Gene List Overlap
updated 5.0 years ago by
Ram
44k • written 13.0 years ago by
brentp
24k
6
votes
0
replies
4.2k
views
Answer:
A: Bed Files Comparison
updated 5.0 years ago by
Ram
44k • written 13.4 years ago by
brentp
24k
1
vote
2
replies
7.2k
views
Comment:
C: Pat Schloss of Mothur uses this
updated 5.1 years ago by
Ram
44k • written 10.1 years ago by
brentp
24k
0
votes
0
replies
8.3k
views
Comment:
C: virtualenv - running Python based software in isolation
updated 5.1 years ago by
Ram
44k • written 10.3 years ago by
brentp
24k
2
votes
0
replies
4.6k
views
Comment:
C: How can I learn cluster computing?
updated 5.2 years ago by
Ram
44k • written 10.0 years ago by
brentp
24k
3
votes
1
reply
3.9k
views
Answer:
Answer: What bioinformatics tools/software do not get enough recognition?
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
brentp
24k
38
votes
1
reply
57k
views
Answer:
Answer: Difference between Hard Clip and Soft Clip in Samtools CIGAR string
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
brentp
24k
2
votes
0
replies
4.1k
views
Answer:
A: Co-occurring TF motifs in peak file from ChIP-seq experiment
updated 5.2 years ago by
Ram
44k • written 10.4 years ago by
brentp
24k
5
votes
1
reply
11k
views
Answer:
A: Mm9 Vs Mm10 [Why Is The Information Less In New Genome Build]
updated 5.2 years ago by
Ram
44k • written 12.3 years ago by
brentp
24k
1
vote
0
replies
13k
views
Comment:
C: How To Read A Bigwig File Using Python
updated 5.2 years ago by
Ram
44k • written 12.7 years ago by
brentp
24k
0
votes
0
replies
9.8k
views
Comment:
C: What Does Bwa'S '-N' Parameter Mean?
updated 5.2 years ago by
Ram
44k • written 12.9 years ago by
brentp
24k
0
votes
0
replies
16k
views
Comment:
C: Wiggle File 2 Bed File
updated 5.2 years ago by
Ram
44k • written 12.9 years ago by
brentp
24k
1
vote
0
replies
10k
views
Comment:
C: Cutadapt Or Fastx Clipper
updated 5.2 years ago by
Ram
44k • written 13.2 years ago by
brentp
24k
0
votes
0
replies
7.5k
views
Comment:
C: What Depth Of Coverage For Whole Genome Snp Calling?
updated 5.2 years ago by
Ram
44k • written 13.2 years ago by
brentp
24k
3
votes
0
replies
4.6k
views
Comment:
C: Does Pre-Publishing Open Source Algorithms Hurt Chances Of Getting Published?
updated 5.2 years ago by
Ram
44k • written 13.3 years ago by
brentp
24k
12
votes
10
replies
15k
views
Answer:
A: Statistical Measure Of Biological Significance For Overlapping Genomic Regions
updated 5.2 years ago by
Ram
44k • written 13.6 years ago by
brentp
24k
0
votes
0
replies
3.0k
views
Comment:
C: Exon-Start Same As Exon-End From Ucsc Knowngene
updated 5.2 years ago by
Ram
44k • written 13.5 years ago by
brentp
24k
0
votes
0
replies
10k
views
Comment:
C: Position Weight Matrix From Sequence Alignment
updated 5.2 years ago by
Ram
44k • written 13.6 years ago by
brentp
24k
916 results • Page
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