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Comment: Comment: Core Dumped - STAR mapping
4.5 years ago by prasundutta87 ▴ 730
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3.9k
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Comment: Comment: Flagstats and multiqc
4.5 years ago by prasundutta87 ▴ 730
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3.9k
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Comment: Comment: how to get iDs in VCF file?
4.5 years ago by prasundutta87 ▴ 730
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Answer: Answer: Given my background, what are my chances of being accepted into a PhD program at
4.5 years ago by prasundutta87 ▴ 730
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Answer: Answer: How can a mapping be performed without alignment?
4.5 years ago by prasundutta87 ▴ 730
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Comment: Comment: Mutation hunting in 100 exome samples
4.5 years ago by prasundutta87 ▴ 730
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4.2k
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Comment: Comment: Comparing two variant files
4.5 years ago by prasundutta87 ▴ 730
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4.2k
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Comment: Comment: Comparing two variant files
4.5 years ago by prasundutta87 ▴ 730
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1
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4.2k
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Comment: Comment: Comparing two variant files
4.5 years ago by prasundutta87 ▴ 730
1
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1
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3.3k
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Comment: Comment: How do I filter a multi-individual BCF file for genotype probabilities
4.5 years ago by prasundutta87 ▴ 730
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7.6k
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Comment: Comment: how to use the samtools filtering expression ?
4.5 years ago by prasundutta87 ▴ 730
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7.6k
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Comment: Comment: how to use the samtools filtering expression ?
4.5 years ago by prasundutta87 ▴ 730
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3.2k
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Comment: Comment: Allele Specific Expression (ASE) from RNA seq data
4.5 years ago by prasundutta87 ▴ 730
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1
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3.2k
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Comment: Comment: Allele Specific Expression (ASE) from RNA seq data
4.5 years ago by prasundutta87 ▴ 730
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1.3k
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Answer: Answer: PCA plot making
4.6 years ago by prasundutta87 ▴ 730
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2.6k
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Comment: Comment: remove unmapped reads on a specific chromosome only
4.6 years ago by prasundutta87 ▴ 730
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2.6k
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Answer: Answer: remove unmapped reads on a specific chromosome only
4.6 years ago by prasundutta87 ▴ 730
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2.0k
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Comment: Comment: Finding transcriptome coverage of genome
4.6 years ago by prasundutta87 ▴ 730
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1.3k
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Comment: Comment: Multiple Transctipr ID (NM ) from MyVariantInfo
4.6 years ago by prasundutta87 ▴ 730
2
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1
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1.9k
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Comment: Comment: TiTv ratio
4.6 years ago by prasundutta87 ▴ 730
2
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2.1k
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Comment: Comment: Picard and GaTK HaplotypeCaller
4.6 years ago by prasundutta87 ▴ 730
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3.3k
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Answer: A: Read VEP output from command line in R
4.6 years ago by prasundutta87 ▴ 730
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1.2k
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Comment: C: How to keep the individual read depth with bcftools call?
4.7 years ago by prasundutta87 ▴ 730
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1
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9.4k
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Comment: C: how to remove duplicates with picard
4.7 years ago by prasundutta87 ▴ 730
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15k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
4.7 years ago by prasundutta87 ▴ 730
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0
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15k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
4.7 years ago by prasundutta87 ▴ 730
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1
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15k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
4.7 years ago by prasundutta87 ▴ 730
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3.5k
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Comment: C: GATK tool to merge INDEL with SNPs with the same set of samples
4.7 years ago by prasundutta87 ▴ 730
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1
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2.4k
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Comment: C: bcftools norm resulting in '*' in alternate allele
4.7 years ago by prasundutta87 ▴ 730
3
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3
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2.4k
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bcftools norm resulting in '*' in alternate allele
SNP bcftools VCF exome
updated 15 months ago by ▴ 210 • written 4.7 years ago by ▴ 730
1
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1
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2.1k
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Using GRch38 (human genome) primary assembly for mapping long reads
assembly alignment
updated 4.7 years ago by 8.1k • written 4.8 years ago by ▴ 730
1
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0
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1.5k
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Answer: A: Human Exome Variant Reference
4.7 years ago by prasundutta87 ▴ 730
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0
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617
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number of reads outside exonic regions in an exome sequencing experiment
exome next-gen sequencing
4.7 years ago by prasundutta87 ▴ 730
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1
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5.7k
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Comment: C: Determine the sex of a sample from a .vcf
4.8 years ago by prasundutta87 ▴ 730
2
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1
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5.7k
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Answer: A: Determine the sex of a sample from a .vcf
4.8 years ago by prasundutta87 ▴ 730
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0
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1.2k
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Using 1000 genomes phase 3 variants for BQSR
SNP next-gen snp GATK
4.8 years ago by prasundutta87 ▴ 730
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0
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1.3k
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Comment: C: Annotating variants using latest version fof the genome
5.0 years ago by prasundutta87 ▴ 730
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1
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1.3k
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Comment: C: Annotating variants using latest version fof the genome
5.0 years ago by prasundutta87 ▴ 730
4
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5
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1.3k
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Annotating variants using latest version fof the genome
SNP snp VCF
5.0 years ago by prasundutta87 ▴ 730
1
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0
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3.4k
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Comment: C: Identifying Private SNPs between multi sample vcf files.
5.2 years ago by prasundutta87 ▴ 730
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1
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1.6k
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rare SNP or SNV
snp snv
5.2 years ago by prasundutta87 ▴ 730
0
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0
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967
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find tabix version
tabix software VCF
5.2 years ago by prasundutta87 ▴ 730
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1
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1.5k
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Comment: C: methylation % calculation for targeted region
5.4 years ago by prasundutta87 ▴ 730
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1.5k
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Comment: C: methylation % calculation for targeted region
5.4 years ago by prasundutta87 ▴ 730
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4
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1.5k
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methylation % calculation for targeted region
methylation
5.4 years ago by prasundutta87 ▴ 730
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4.0k
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Comment: C: EPIC methylation manifest GRch38 query
5.4 years ago by prasundutta87 ▴ 730
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1
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8.7k
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Comment: C: Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (
updated 5.4 years ago by 90k • written 5.4 years ago by ▴ 730
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1
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2.6k
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Comment: C: query regarding using manifest and annotation in Minfi (EPIC Methylation array a
5.5 years ago by prasundutta87 ▴ 730
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2
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2.6k
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query regarding using manifest and annotation in Minfi (EPIC Methylation array analysis)
R Minfi EPIC array Methylation
updated 4.6 years ago by • 0 • written 5.5 years ago by ▴ 730
0
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1.2k
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Comment: C: array jobs accessing one binary in population genetics software
5.6 years ago by prasundutta87 ▴ 730
261 results • Page 2 of 6
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