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1
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379
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Comment:
Comment: RNASeq QC and STAR results confused
2 days ago by
jkim
▴ 230
0
votes
0
replies
7.6k
views
Comment:
Comment: RNAseq requirements: Biological and Technical replicates
9 weeks ago by
jkim
▴ 230
0
votes
1
reply
7.6k
views
Comment:
Comment: RNAseq requirements: Biological and Technical replicates
9 weeks ago by
jkim
▴ 230
1
vote
0
replies
959
views
Comment:
Comment: How do I interpert PCA before differential expression analysis
3 months ago by
jkim
▴ 230
0
votes
0
replies
596
views
Comment:
Comment: A question about model matrix and contrast
4 months ago by
jkim
▴ 230
3
votes
2
replies
596
views
A question about model matrix and contrast
makeContrasts
limma
4 months ago by
jkim
▴ 230
0
votes
0
replies
609
views
Comment:
Comment: comparison interpretation
4 months ago by
jkim
▴ 230
2
votes
3
replies
609
views
comparison interpretation
model-matrix
contrast
design-matrix
4 months ago by
jkim
▴ 230
1
vote
1
reply
1.3k
views
Comment:
Comment: DESeq2 design for differential expression with 2 timepoints and 2 controls
4 months ago by
jkim
▴ 230
0
votes
0
replies
1.3k
views
Comment:
Comment: Different comparisons in RNASeq Analysis
5 months ago by
jkim
▴ 230
0
votes
1
reply
1.3k
views
Comment:
Comment: Different comparisons in RNASeq Analysis
5 months ago by
jkim
▴ 230
0
votes
2
replies
947
views
Comment:
Comment: Addressing two nuisance factors in RNAseq
6 months ago by
jkim
▴ 230
4
votes
4
replies
947
views
Addressing two nuisance factors in RNAseq
bulkRNAseq
updated 6 months ago by
ATpoint
90k • written 6 months ago by
jkim
▴ 230
0
votes
0
replies
4.1k
views
Comment:
Comment: DESEQ with time series data on mutant vs. wild-type?
13 months ago by
jkim
▴ 230
1
vote
1
reply
4.1k
views
Comment:
Comment: DESEQ with time series data on mutant vs. wild-type?
13 months ago by
jkim
▴ 230
0
votes
1
reply
1.1k
views
Comment:
Comment: RNA seq data for normal samples
15 months ago by
jkim
▴ 230
0
votes
0
replies
1.1k
views
Comment:
Comment: PCA plot
18 months ago by
jkim
▴ 230
0
votes
0
replies
2.3k
views
Comment:
Comment: PCA plot (Suggestions Needed)
18 months ago by
jkim
▴ 230
1
vote
0
replies
1.4k
views
Comment:
Comment: Error during demultiplexing by bcl2fastq
19 months ago by
jkim
▴ 230
0
votes
1
reply
2.2k
views
Comment:
Comment: 99.9999% of Q30 bases is normal?
19 months ago by
jkim
▴ 230
0
votes
1
reply
2.2k
views
Comment:
Comment: 99.9999% of Q30 bases is normal?
19 months ago by
jkim
▴ 230
0
votes
0
replies
1.6k
views
Comment:
Comment: create a gene count matrix csv file from seurat object
19 months ago by
jkim
▴ 230
0
votes
1
reply
1.6k
views
Comment:
Comment: create a gene count matrix csv file from seurat object
19 months ago by
jkim
▴ 230
0
votes
1
reply
1.6k
views
Comment:
Comment: create a gene count matrix csv file from seurat object
19 months ago by
jkim
▴ 230
2
votes
6
replies
1.6k
views
create a gene count matrix csv file from seurat object
Seurat
sparseMatrix
19 months ago by
jkim
▴ 230
1
vote
1
reply
1.8k
views
Answer:
Answer: RNAseq analysis: how to add new gene into an existing worm based reference
21 months ago by
jkim
▴ 230
1
vote
1
reply
3.1k
views
Comment:
Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
23 months ago by
jkim
▴ 230
0
votes
0
replies
589
views
% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
23 months ago by
jkim
▴ 230
0
votes
0
replies
3.1k
views
Comment:
Comment: Nextflow bwa-mem2 pipeline/channel question
2.0 years ago by
jkim
▴ 230
0
votes
2
replies
2.8k
views
Comment:
Comment: Mentor for a beginner bioinformatics student
2.1 years ago by
jkim
▴ 230
0
votes
0
replies
2.0k
views
Comment:
Comment: Merge fastq files across different lanes in Nextflow
2.1 years ago by
jkim
▴ 230
3
votes
3
replies
2.0k
views
Merge fastq files across different lanes in Nextflow
Nextflow
Fastq
2.1 years ago by
jkim
▴ 230
1
vote
0
replies
2.0k
views
Answer:
Answer: Merge fastq files across different lanes in Nextflow
2.1 years ago by
jkim
▴ 230
0
votes
0
replies
2.7k
views
Comment:
Comment: STAR index not working
2.2 years ago by
jkim
▴ 230
0
votes
1
reply
1.3k
views
Comment:
Comment: Batch effect consideration (re-seq the same sample twice)
2.2 years ago by
jkim
▴ 230
4
votes
3
replies
1.3k
views
Batch effect consideration (re-seq the same sample twice)
RNA-seq
batch-effect
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
jkim
▴ 230
0
votes
0
replies
1.7k
views
Comment:
Comment: One sample has quite different # of reads from different lanes.
2.2 years ago by
jkim
▴ 230
0
votes
1
reply
1.7k
views
Comment:
Comment: One sample has quite different # of reads from different lanes.
2.2 years ago by
jkim
▴ 230
4
votes
4
replies
1.7k
views
One sample has quite different # of reads from different lanes.
demultiplexing
illumina
fastq
2.2 years ago by
jkim
▴ 230
0
votes
0
replies
2.2k
views
Comment:
Comment: Double biological replication when using DESeq2
2.3 years ago by
jkim
▴ 230
0
votes
0
replies
1.5k
views
Comment:
Comment: How to interpret RNAseq output?
2.4 years ago by
jkim
▴ 230
1
vote
0
replies
1.3k
views
Comment:
Comment: mRNA library preparation Adapter ligation
2.5 years ago by
jkim
▴ 230
0
votes
0
replies
2.2k
views
Comment:
Comment: How to trim reads for Chip Seq analysis
2.5 years ago by
jkim
▴ 230
0
votes
0
replies
1.2k
views
Answer:
Answer: What is the best aligner for stranded RNASeq
2.5 years ago by
jkim
▴ 230
0
votes
1
reply
3.2k
views
Comment:
Comment: trimmomatic on scRNA seq data
2.5 years ago by
jkim
▴ 230
0
votes
0
replies
2.7k
views
Comment:
Comment: Comparing two RNA-Seq datasets
3.1 years ago by
jkim
▴ 230
0
votes
1
reply
2.7k
views
Answer:
Answer: Comparing two RNA-Seq datasets
3.1 years ago by
jkim
▴ 230
1
vote
1
reply
1.6k
views
Comment:
Comment: DE analysis with multiple factors
3.1 years ago by
jkim
▴ 230
0
votes
1
reply
2.1k
views
Comment:
Comment: Snakemake + singularity fails to locate bwa index files.
3.2 years ago by
jkim
▴ 230
0
votes
1
reply
2.1k
views
Comment:
Comment: Snakemake + singularity fails to locate bwa index files.
3.2 years ago by
jkim
▴ 230
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