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759
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Comment:
Comment: Different comparisons in RNASeq Analysis
7 days ago by
jkim
▴ 190
0
votes
1
reply
759
views
Comment:
Comment: Different comparisons in RNASeq Analysis
7 days ago by
jkim
▴ 190
0
votes
2
replies
687
views
Comment:
Comment: Addressing two nuisance factors in RNAseq
8 weeks ago by
jkim
▴ 190
4
votes
4
replies
687
views
Addressing two nuisance factors in RNAseq
bulkRNAseq
updated 8 weeks ago by
ATpoint
88k • written 8 weeks ago by
jkim
▴ 190
0
votes
0
replies
3.1k
views
Comment:
Comment: DESEQ with time series data on mutant vs. wild-type?
8 months ago by
jkim
▴ 190
1
vote
1
reply
3.1k
views
Comment:
Comment: DESEQ with time series data on mutant vs. wild-type?
8 months ago by
jkim
▴ 190
0
votes
1
reply
857
views
Comment:
Comment: RNA seq data for normal samples
10 months ago by
jkim
▴ 190
0
votes
0
replies
922
views
Comment:
Comment: PCA plot
14 months ago by
jkim
▴ 190
0
votes
0
replies
1.9k
views
Comment:
Comment: PCA plot (Suggestions Needed)
14 months ago by
jkim
▴ 190
1
vote
0
replies
1.1k
views
Comment:
Comment: Error during demultiplexing by bcl2fastq
14 months ago by
jkim
▴ 190
0
votes
1
reply
1.7k
views
Comment:
Comment: 99.9999% of Q30 bases is normal?
14 months ago by
jkim
▴ 190
0
votes
1
reply
1.7k
views
Comment:
Comment: 99.9999% of Q30 bases is normal?
14 months ago by
jkim
▴ 190
0
votes
0
replies
1.3k
views
Comment:
Comment: create a gene count matrix csv file from seurat object
14 months ago by
jkim
▴ 190
0
votes
1
reply
1.3k
views
Comment:
Comment: create a gene count matrix csv file from seurat object
14 months ago by
jkim
▴ 190
0
votes
1
reply
1.3k
views
Comment:
Comment: create a gene count matrix csv file from seurat object
14 months ago by
jkim
▴ 190
2
votes
6
replies
1.3k
views
create a gene count matrix csv file from seurat object
Seurat
sparseMatrix
14 months ago by
jkim
▴ 190
1
vote
1
reply
1.4k
views
Answer:
Answer: RNAseq analysis: how to add new gene into an existing worm based reference
17 months ago by
jkim
▴ 190
1
vote
1
reply
2.6k
views
Comment:
Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
18 months ago by
jkim
▴ 190
0
votes
0
replies
460
views
% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
18 months ago by
jkim
▴ 190
0
votes
0
replies
2.6k
views
Comment:
Comment: Nextflow bwa-mem2 pipeline/channel question
19 months ago by
jkim
▴ 190
0
votes
2
replies
2.4k
views
Comment:
Comment: Mentor for a beginner bioinformatics student
20 months ago by
jkim
▴ 190
0
votes
0
replies
1.6k
views
Comment:
Comment: Merge fastq files across different lanes in Nextflow
20 months ago by
jkim
▴ 190
3
votes
3
replies
1.6k
views
Merge fastq files across different lanes in Nextflow
Nextflow
Fastq
20 months ago by
jkim
▴ 190
1
vote
0
replies
1.6k
views
Answer:
Answer: Merge fastq files across different lanes in Nextflow
20 months ago by
jkim
▴ 190
0
votes
0
replies
2.2k
views
Comment:
Comment: STAR index not working
21 months ago by
jkim
▴ 190
0
votes
1
reply
1.1k
views
Comment:
Comment: Batch effect consideration (re-seq the same sample twice)
21 months ago by
jkim
▴ 190
4
votes
3
replies
1.1k
views
Batch effect consideration (re-seq the same sample twice)
RNA-seq
batch-effect
updated 21 months ago by
Ram
45k • written 21 months ago by
jkim
▴ 190
0
votes
0
replies
1.4k
views
Comment:
Comment: One sample has quite different # of reads from different lanes.
22 months ago by
jkim
▴ 190
0
votes
1
reply
1.4k
views
Comment:
Comment: One sample has quite different # of reads from different lanes.
22 months ago by
jkim
▴ 190
4
votes
4
replies
1.4k
views
One sample has quite different # of reads from different lanes.
demultiplexing
illumina
fastq
22 months ago by
jkim
▴ 190
0
votes
0
replies
1.8k
views
Comment:
Comment: Double biological replication when using DESeq2
23 months ago by
jkim
▴ 190
0
votes
0
replies
1.3k
views
Comment:
Comment: How to interpret RNAseq output?
23 months ago by
jkim
▴ 190
1
vote
0
replies
1.0k
views
Comment:
Comment: mRNA library preparation Adapter ligation
2.1 years ago by
jkim
▴ 190
0
votes
0
replies
1.9k
views
Comment:
Comment: How to trim reads for Chip Seq analysis
2.1 years ago by
jkim
▴ 190
0
votes
0
replies
1.1k
views
Answer:
Answer: What is the best aligner for stranded RNASeq
2.1 years ago by
jkim
▴ 190
0
votes
1
reply
2.8k
views
Comment:
Comment: trimmomatic on scRNA seq data
2.1 years ago by
jkim
▴ 190
0
votes
0
replies
2.4k
views
Comment:
Comment: Comparing two RNA-Seq datasets
2.7 years ago by
jkim
▴ 190
0
votes
1
reply
2.4k
views
Answer:
Answer: Comparing two RNA-Seq datasets
2.7 years ago by
jkim
▴ 190
1
vote
1
reply
1.3k
views
Comment:
Comment: DE analysis with multiple factors
2.7 years ago by
jkim
▴ 190
0
votes
1
reply
1.9k
views
Comment:
Comment: Snakemake + singularity fails to locate bwa index files.
2.8 years ago by
jkim
▴ 190
0
votes
1
reply
1.9k
views
Comment:
Comment: Snakemake + singularity fails to locate bwa index files.
2.8 years ago by
jkim
▴ 190
3
votes
5
replies
1.9k
views
Snakemake + singularity fails to locate bwa index files.
singularity
snakemake
bwa
updated 2.8 years ago by
Jeremy Leipzig
23k • written 2.8 years ago by
jkim
▴ 190
0
votes
0
replies
3.0k
views
Comment:
Comment: Read coverage shows a difference in IGV
2.8 years ago by
jkim
▴ 190
0
votes
0
replies
3.0k
views
Comment:
Comment: Read coverage shows a difference in IGV
2.8 years ago by
jkim
▴ 190
0
votes
0
replies
3.0k
views
Comment:
Comment: Read coverage shows a difference in IGV
2.8 years ago by
jkim
▴ 190
0
votes
0
replies
3.0k
views
Comment:
Comment: Read coverage shows a difference in IGV
2.8 years ago by
jkim
▴ 190
3
votes
7
replies
3.0k
views
Read coverage shows a difference in IGV
coverage
BAM
2.8 years ago by
jkim
▴ 190
0
votes
0
replies
6.9k
views
Comment:
Comment: Is there a limit for SAMTOOLS tview option?
2.8 years ago by
jkim
▴ 190
0
votes
0
replies
2.3k
views
Comment:
Comment: Filter out reads with hidden tags in bam files
2.8 years ago by
jkim
▴ 190
0
votes
0
replies
2.3k
views
Comment:
Comment: Filter out reads with hidden tags in bam files
2.8 years ago by
jkim
▴ 190
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