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379
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Comment: Comment: RNASeq QC and STAR results confused
2 days ago by jkim ▴ 230
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7.6k
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Comment: Comment: RNAseq requirements: Biological and Technical replicates
9 weeks ago by jkim ▴ 230
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1
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7.6k
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Comment: Comment: RNAseq requirements: Biological and Technical replicates
9 weeks ago by jkim ▴ 230
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959
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Comment: Comment: How do I interpert PCA before differential expression analysis
3 months ago by jkim ▴ 230
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0
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596
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Comment: Comment: A question about model matrix and contrast
4 months ago by jkim ▴ 230
3
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2
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596
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A question about model matrix and contrast
makeContrasts limma
4 months ago by jkim ▴ 230
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609
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Comment: Comment: comparison interpretation
4 months ago by jkim ▴ 230
2
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3
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609
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comparison interpretation
model-matrix contrast design-matrix
4 months ago by jkim ▴ 230
1
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1.3k
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Comment: Comment: DESeq2 design for differential expression with 2 timepoints and 2 controls
4 months ago by jkim ▴ 230
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1.3k
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Comment: Comment: Different comparisons in RNASeq Analysis
5 months ago by jkim ▴ 230
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1
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1.3k
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Comment: Comment: Different comparisons in RNASeq Analysis
5 months ago by jkim ▴ 230
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2
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947
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Comment: Comment: Addressing two nuisance factors in RNAseq
6 months ago by jkim ▴ 230
4
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4
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947
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Addressing two nuisance factors in RNAseq
bulkRNAseq
updated 6 months ago by 90k • written 6 months ago by ▴ 230
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4.1k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
13 months ago by jkim ▴ 230
1
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1
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4.1k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
13 months ago by jkim ▴ 230
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1
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1.1k
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Comment: Comment: RNA seq data for normal samples
15 months ago by jkim ▴ 230
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1.1k
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Comment: Comment: PCA plot
18 months ago by jkim ▴ 230
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2.3k
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Comment: Comment: PCA plot (Suggestions Needed)
18 months ago by jkim ▴ 230
1
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1.4k
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Comment: Comment: Error during demultiplexing by bcl2fastq
19 months ago by jkim ▴ 230
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1
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2.2k
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Comment: Comment: 99.9999% of Q30 bases is normal?
19 months ago by jkim ▴ 230
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1
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2.2k
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Comment: Comment: 99.9999% of Q30 bases is normal?
19 months ago by jkim ▴ 230
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0
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1.6k
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Comment: Comment: create a gene count matrix csv file from seurat object
19 months ago by jkim ▴ 230
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1
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1.6k
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Comment: Comment: create a gene count matrix csv file from seurat object
19 months ago by jkim ▴ 230
0
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1
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1.6k
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Comment: Comment: create a gene count matrix csv file from seurat object
19 months ago by jkim ▴ 230
2
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6
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1.6k
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create a gene count matrix csv file from seurat object
Seurat sparseMatrix
19 months ago by jkim ▴ 230
1
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1
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1.8k
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
21 months ago by jkim ▴ 230
1
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1
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3.1k
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Comment: Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
23 months ago by jkim ▴ 230
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0
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589
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% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
23 months ago by jkim ▴ 230
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0
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3.1k
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Comment: Comment: Nextflow bwa-mem2 pipeline/channel question
2.0 years ago by jkim ▴ 230
0
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2
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2.8k
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Comment: Comment: Mentor for a beginner bioinformatics student
2.1 years ago by jkim ▴ 230
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0
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2.0k
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Comment: Comment: Merge fastq files across different lanes in Nextflow
2.1 years ago by jkim ▴ 230
3
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3
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2.0k
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Merge fastq files across different lanes in Nextflow
Nextflow Fastq
2.1 years ago by jkim ▴ 230
1
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2.0k
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Answer: Answer: Merge fastq files across different lanes in Nextflow
2.1 years ago by jkim ▴ 230
0
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0
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2.7k
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Comment: Comment: STAR index not working
2.2 years ago by jkim ▴ 230
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1
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1.3k
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
2.2 years ago by jkim ▴ 230
4
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3
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1.3k
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Batch effect consideration (re-seq the same sample twice)
RNA-seq batch-effect
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 230
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1.7k
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Comment: Comment: One sample has quite different # of reads from different lanes.
2.2 years ago by jkim ▴ 230
0
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1
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1.7k
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Comment: Comment: One sample has quite different # of reads from different lanes.
2.2 years ago by jkim ▴ 230
4
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4
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1.7k
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One sample has quite different # of reads from different lanes.
demultiplexing illumina fastq
2.2 years ago by jkim ▴ 230
0
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0
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2.2k
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Comment: Comment: Double biological replication when using DESeq2
2.3 years ago by jkim ▴ 230
0
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0
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1.5k
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Comment: Comment: How to interpret RNAseq output?
2.4 years ago by jkim ▴ 230
1
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0
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1.3k
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Comment: Comment: mRNA library preparation Adapter ligation
2.5 years ago by jkim ▴ 230
0
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0
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2.2k
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Comment: Comment: How to trim reads for Chip Seq analysis
2.5 years ago by jkim ▴ 230
0
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0
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1.2k
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Answer: Answer: What is the best aligner for stranded RNASeq
2.5 years ago by jkim ▴ 230
0
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1
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3.2k
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Comment: Comment: trimmomatic on scRNA seq data
2.5 years ago by jkim ▴ 230
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0
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2.7k
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Comment: Comment: Comparing two RNA-Seq datasets
3.1 years ago by jkim ▴ 230
0
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1
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2.7k
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Answer: Answer: Comparing two RNA-Seq datasets
3.1 years ago by jkim ▴ 230
1
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1
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1.6k
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Comment: Comment: DE analysis with multiple factors
3.1 years ago by jkim ▴ 230
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1
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2.1k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
3.2 years ago by jkim ▴ 230
0
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1
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2.1k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
3.2 years ago by jkim ▴ 230
86 results • Page 1 of 2
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