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Comment: Comment: RNAseq requirements: Biological and Technical replicates
19 days ago by jkim ▴ 220
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1
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7.4k
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Comment: Comment: RNAseq requirements: Biological and Technical replicates
19 days ago by jkim ▴ 220
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0
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849
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Comment: Comment: How do I interpert PCA before differential expression analysis
9 weeks ago by jkim ▴ 220
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535
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Comment: Comment: A question about model matrix and contrast
10 weeks ago by jkim ▴ 220
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2
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535
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A question about model matrix and contrast
makeContrasts limma
10 weeks ago by jkim ▴ 220
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0
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526
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Comment: Comment: comparison interpretation
3 months ago by jkim ▴ 220
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3
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526
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comparison interpretation
model-matrix contrast design-matrix
11 weeks ago by jkim ▴ 220
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1.0k
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Comment: Comment: DESeq2 design for differential expression with 2 timepoints and 2 controls
3 months ago by jkim ▴ 220
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1.1k
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Comment: Comment: Different comparisons in RNASeq Analysis
3 months ago by jkim ▴ 220
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1
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1.1k
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Comment: Comment: Different comparisons in RNASeq Analysis
3 months ago by jkim ▴ 220
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2
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860
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Comment: Comment: Addressing two nuisance factors in RNAseq
5 months ago by jkim ▴ 220
4
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4
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860
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Addressing two nuisance factors in RNAseq
bulkRNAseq
updated 5 months ago by 89k • written 5 months ago by ▴ 220
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3.7k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
12 months ago by jkim ▴ 220
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3.7k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
12 months ago by jkim ▴ 220
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1
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999
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Comment: Comment: RNA seq data for normal samples
14 months ago by jkim ▴ 220
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1.0k
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Comment: Comment: PCA plot
17 months ago by jkim ▴ 220
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2.1k
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Comment: Comment: PCA plot (Suggestions Needed)
17 months ago by jkim ▴ 220
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1.3k
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Comment: Comment: Error during demultiplexing by bcl2fastq
17 months ago by jkim ▴ 220
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1
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2.0k
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Comment: Comment: 99.9999% of Q30 bases is normal?
17 months ago by jkim ▴ 220
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1
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2.0k
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Comment: Comment: 99.9999% of Q30 bases is normal?
17 months ago by jkim ▴ 220
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0
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1.5k
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Comment: Comment: create a gene count matrix csv file from seurat object
17 months ago by jkim ▴ 220
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1
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1.5k
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Comment: Comment: create a gene count matrix csv file from seurat object
17 months ago by jkim ▴ 220
0
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1
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1.5k
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Comment: Comment: create a gene count matrix csv file from seurat object
17 months ago by jkim ▴ 220
2
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6
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1.5k
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create a gene count matrix csv file from seurat object
Seurat sparseMatrix
17 months ago by jkim ▴ 220
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1
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1.5k
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
20 months ago by jkim ▴ 220
1
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1
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2.9k
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Comment: Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
21 months ago by jkim ▴ 220
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0
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539
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% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
21 months ago by jkim ▴ 220
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0
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3.0k
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Comment: Comment: Nextflow bwa-mem2 pipeline/channel question
23 months ago by jkim ▴ 220
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2
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2.6k
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Comment: Comment: Mentor for a beginner bioinformatics student
23 months ago by jkim ▴ 220
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0
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1.8k
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Comment: Comment: Merge fastq files across different lanes in Nextflow
23 months ago by jkim ▴ 220
3
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3
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1.8k
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Merge fastq files across different lanes in Nextflow
Nextflow Fastq
23 months ago by jkim ▴ 220
1
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0
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1.8k
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Answer: Answer: Merge fastq files across different lanes in Nextflow
23 months ago by jkim ▴ 220
0
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0
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2.5k
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Comment: Comment: STAR index not working
2.0 years ago by jkim ▴ 220
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1
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1.3k
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
2.0 years ago by jkim ▴ 220
4
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3
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1.3k
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Batch effect consideration (re-seq the same sample twice)
RNA-seq batch-effect
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 220
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0
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1.6k
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Comment: Comment: One sample has quite different # of reads from different lanes.
2.1 years ago by jkim ▴ 220
0
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1
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1.6k
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Comment: Comment: One sample has quite different # of reads from different lanes.
2.1 years ago by jkim ▴ 220
4
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4
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1.6k
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One sample has quite different # of reads from different lanes.
demultiplexing illumina fastq
2.1 years ago by jkim ▴ 220
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0
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2.0k
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Comment: Comment: Double biological replication when using DESeq2
2.2 years ago by jkim ▴ 220
0
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0
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1.4k
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Comment: Comment: How to interpret RNAseq output?
2.2 years ago by jkim ▴ 220
1
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0
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1.2k
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Comment: Comment: mRNA library preparation Adapter ligation
2.4 years ago by jkim ▴ 220
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0
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2.1k
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Comment: Comment: How to trim reads for Chip Seq analysis
2.4 years ago by jkim ▴ 220
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0
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1.2k
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Answer: Answer: What is the best aligner for stranded RNASeq
2.4 years ago by jkim ▴ 220
0
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1
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3.1k
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Comment: Comment: trimmomatic on scRNA seq data
2.4 years ago by jkim ▴ 220
0
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0
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2.6k
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Comment: Comment: Comparing two RNA-Seq datasets
3.0 years ago by jkim ▴ 220
0
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1
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2.6k
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Answer: Answer: Comparing two RNA-Seq datasets
3.0 years ago by jkim ▴ 220
1
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1
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1.5k
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Comment: Comment: DE analysis with multiple factors
3.0 years ago by jkim ▴ 220
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1
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2.0k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
3.0 years ago by jkim ▴ 220
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1
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2.0k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
3.0 years ago by jkim ▴ 220
3
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5
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2.0k
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Snakemake + singularity fails to locate bwa index files.
singularity snakemake bwa
updated 3.0 years ago by 23k • written 3.0 years ago by ▴ 220
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