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Comment: Comment: PCA plot
7 weeks ago by jkim ▴ 170
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0
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842
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Comment: Comment: PCA plot (Suggestions Needed)
7 weeks ago by jkim ▴ 170
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0
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310
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Comment: Comment: Error during demultiplexing by bcl2fastq
9 weeks ago by jkim ▴ 170
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1
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730
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Comment: Comment: 99.9999% of Q30 bases is normal?
9 weeks ago by jkim ▴ 170
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1
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730
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Comment: Comment: 99.9999% of Q30 bases is normal?
9 weeks ago by jkim ▴ 170
0
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0
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546
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Comment: Comment: create a gene count matrix csv file from seurat object
9 weeks ago by jkim ▴ 170
0
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1
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546
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Comment: Comment: create a gene count matrix csv file from seurat object
9 weeks ago by jkim ▴ 170
0
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1
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546
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Comment: Comment: create a gene count matrix csv file from seurat object
9 weeks ago by jkim ▴ 170
2
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6
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546
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create a gene count matrix csv file from seurat object
Seurat sparseMatrix
9 weeks ago by jkim ▴ 170
1
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1
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681
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
4 months ago by jkim ▴ 170
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1
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1.2k
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Comment: Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
6 months ago by jkim ▴ 170
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0
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246
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% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
6 months ago by jkim ▴ 170
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0
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1.5k
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Comment: Comment: Nextflow bwa-mem2 pipeline/channel question
7 months ago by jkim ▴ 170
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2
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1.5k
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Comment: Comment: Mentor for a beginner bioinformatics student
7 months ago by jkim ▴ 170
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0
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822
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Comment: Comment: Merge fastq files across different lanes in Nextflow
8 months ago by jkim ▴ 170
3
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3
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822
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Merge fastq files across different lanes in Nextflow
Nextflow Fastq
8 months ago by jkim ▴ 170
1
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0
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822
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Answer: Answer: Merge fastq files across different lanes in Nextflow
8 months ago by jkim ▴ 170
0
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0
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1.3k
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Comment: Comment: STAR index not working
8 months ago by jkim ▴ 170
0
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1
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629
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
9 months ago by jkim ▴ 170
4
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3
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629
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Batch effect consideration (re-seq the same sample twice)
RNA-seq batch-effect
updated 9 months ago by 44k • written 9 months ago by ▴ 170
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0
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887
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Comment: Comment: One sample has quite different # of reads from different lanes.
9 months ago by jkim ▴ 170
0
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1
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887
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Comment: Comment: One sample has quite different # of reads from different lanes.
9 months ago by jkim ▴ 170
4
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4
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887
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One sample has quite different # of reads from different lanes.
demultiplexing illumina fastq
9 months ago by jkim ▴ 170
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0
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1.2k
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Comment: Comment: Double biological replication when using DESeq2
11 months ago by jkim ▴ 170
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0
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799
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Comment: Comment: How to interpret RNAseq output?
11 months ago by jkim ▴ 170
1
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0
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649
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Comment: Comment: mRNA library preparation Adapter ligation
13 months ago by jkim ▴ 170
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0
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1.2k
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Comment: Comment: How to trim reads for Chip Seq analysis
13 months ago by jkim ▴ 170
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0
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629
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Answer: Answer: What is the best aligner for stranded RNASeq
13 months ago by jkim ▴ 170
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1
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1.8k
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Comment: Comment: trimmomatic on scRNA seq data
13 months ago by jkim ▴ 170
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0
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1.8k
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Comment: Comment: Comparing two RNA-Seq datasets
20 months ago by jkim ▴ 170
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1
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1.8k
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Answer: Answer: Comparing two RNA-Seq datasets
20 months ago by jkim ▴ 170
1
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1
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874
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Comment: Comment: DE analysis with multiple factors
21 months ago by jkim ▴ 170
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1
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1.4k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
21 months ago by jkim ▴ 170
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1
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1.4k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
21 months ago by jkim ▴ 170
3
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5
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1.4k
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Snakemake + singularity fails to locate bwa index files.
singularity snakemake bwa
updated 21 months ago by 22k • written 21 months ago by ▴ 170
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1.7k
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Comment: Comment: Read coverage shows a difference in IGV
21 months ago by jkim ▴ 170
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0
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1.7k
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Comment: Comment: Read coverage shows a difference in IGV
21 months ago by jkim ▴ 170
0
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0
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1.7k
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Comment: Comment: Read coverage shows a difference in IGV
21 months ago by jkim ▴ 170
0
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0
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1.7k
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Comment: Comment: Read coverage shows a difference in IGV
21 months ago by jkim ▴ 170
3
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7
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1.7k
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Read coverage shows a difference in IGV
coverage BAM
21 months ago by jkim ▴ 170
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0
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5.7k
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Comment: Comment: Is there a limit for SAMTOOLS tview option?
21 months ago by jkim ▴ 170
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0
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1.5k
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Comment: Comment: Filter out reads with hidden tags in bam files
22 months ago by jkim ▴ 170
0
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0
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1.5k
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Comment: Comment: Filter out reads with hidden tags in bam files
22 months ago by jkim ▴ 170
0
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0
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1.5k
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Comment: Comment: Filter out reads with hidden tags in bam files
22 months ago by jkim ▴ 170
4
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7
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1.5k
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Filter out reads with hidden tags in bam files
BAM samtools
22 months ago by jkim ▴ 170
0
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1
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1.5k
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Answer: Answer: Filter out reads with hidden tags in bam files
22 months ago by jkim ▴ 170
0
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0
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998
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Answer: Answer: Counts from STAR with stranded protocol
2.0 years ago by jkim ▴ 170
0
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1
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1.7k
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Comment: Comment: snakemake workflow
2.1 years ago by jkim ▴ 170
0
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0
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1.8k
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Comment: Comment: Biopython first project help
2.2 years ago by jkim ▴ 170
0
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1
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1.8k
views
Comment: Comment: Biopython first project help
2.2 years ago by jkim ▴ 170
70 results • Page 1 of 2
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