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2
votes
2
replies
5.9k
views
STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
STAR
GTF
GRCh37
SJ.out
RNA-Seq
updated 4.3 years ago by
MirkoR
• 0 • written 6.8 years ago by
stefanos.bamopoulos
▴ 40
2
votes
4
replies
3.5k
views
Building a biologically meaningful design matrix for limma/voom in a large RNASeq experiment
limma
voom
RNA-Seq
confounding
updated 5.5 years ago by
Gordon Smyth
★ 7.4k • written 6.3 years ago by
stefanos.bamopoulos
▴ 40
0
votes
0
replies
1.4k
views
Combining lenient prefiltering with expression filtering of the results in a DE experiment
differential expression
limma
RNA-Seq
filtering
updated 6.1 years ago by
Biostar
20 • written 6.3 years ago by
stefanos.bamopoulos
▴ 40
0
votes
0
replies
3.5k
views
Comment:
C: Building a biologically meaningful design matrix for limma/voom in a large RNASe
6.3 years ago by
stefanos.bamopoulos
▴ 40
0
votes
0
replies
5.4k
views
Answer:
A: How can I produce gene level quantification using Salmon pseudo-aligner?
6.3 years ago by
stefanos.bamopoulos
▴ 40
2
votes
4
replies
3.5k
views
Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
RNA-Seq
DE
limma
splice junctions
updated 6.5 years ago by
Biostar
20 • written 7.4 years ago by
stefanos.bamopoulos
▴ 40
0
votes
0
replies
3.5k
views
Comment:
C: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
7.4 years ago by
stefanos.bamopoulos
▴ 40
0
votes
0
replies
2.7k
views
Comment:
C: Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
7.4 years ago by
stefanos.bamopoulos
▴ 40
3
votes
4
replies
2.7k
views
Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
RNA-Seq
salmon
GRCh37
Ensembl
updated 7.4 years ago by
Magali_Ensembl
▴ 150 • written 7.4 years ago by
stefanos.bamopoulos
▴ 40
0
votes
1
reply
3.5k
views
Comment:
C: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
7.4 years ago by
stefanos.bamopoulos
▴ 40
0
votes
1
reply
2.4k
views
Comment:
C: How to splice introne sequences for each transcript.
7.4 years ago by
stefanos.bamopoulos
▴ 40
2
votes
0
replies
3.7k
views
Answer:
A: Help for finding the right FASTA file for kallisto
7.4 years ago by
stefanos.bamopoulos
▴ 40
0
votes
0
replies
2.7k
views
Comment:
C: Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
7.4 years ago by
stefanos.bamopoulos
▴ 40
0
votes
0
replies
3.5k
views
Reference Transcriptome for hg19
RNA-Seq
salmon
transcriptome
reference
hg19
7.5 years ago by
stefanos.bamopoulos
▴ 40
14 results • Page
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