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Answer: Answer: Trimmomatic
updated 12 weeks ago by 43k • written 12 weeks ago by ▴ 460
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Tool: BIRCH3.90 - BioLegato, Apple Silicon, Updates
genomics sequence transcriptomics
3 months ago by brian.fristensky ▴ 460
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430
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Answer: Answer: How to launch MAUVE on Ubuntu 22?
3 months ago by brian.fristensky ▴ 460
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Answer: Answer: What's the general view on point & click bioinformatics for routine analyses?
12 months ago by brian.fristensky ▴ 460
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1.4k
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Answer: Answer: How big is the protein database on NCBI and how do I download it?
16 months ago by brian.fristensky ▴ 460
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870
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Answer: Answer: Error running Trinity
16 months ago by brian.fristensky ▴ 460
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9.2k
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Comment: Comment: Laptops for bioinformatics
18 months ago by brian.fristensky ▴ 460
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815
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Answer: Answer: Why an extremely large number of reads are mapped to several chromosomes in RNA-
18 months ago by brian.fristensky ▴ 460
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1.8k
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Answer: Answer: Renaming sequencing libraries
18 months ago by brian.fristensky ▴ 460
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10k
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Comment: Comment: what are the best resource to learn Linux bash scripting for Bioinformatics
18 months ago by brian.fristensky ▴ 460
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Answer: Answer: Conceptual phylogenetics questions
18 months ago by brian.fristensky ▴ 460
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1.1k
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Comment: Comment: Auto label phylogenetic tree with species name or taxon name from taxon id on ne
19 months ago by brian.fristensky ▴ 460
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1.1k
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Comment: Comment: Best software to edit phylogeny trees
19 months ago by brian.fristensky ▴ 460
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967
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Answer: Answer: Get one hit per specie in BLASTp
20 months ago by brian.fristensky ▴ 460
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1.6k
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Answer: Answer: phylip format sequence name/header issue
20 months ago by brian.fristensky ▴ 460
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1.6k
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Comment: Comment: fastq.gz download error
22 months ago by brian.fristensky ▴ 460
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3.3k
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Answer: Answer: How to translate CDS to an amino acid sequence
23 months ago by brian.fristensky ▴ 460
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439
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Tool: BIRCH Bioinformatics System v3.86
genomics sequence blast transcriptomics
23 months ago by brian.fristensky ▴ 460
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767
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Comment: Comment: Ugene for Centos7
23 months ago by brian.fristensky ▴ 460
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1.4k
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Answer: Answer: Most efficient command line tool for translating the DNA sequences into Protein
24 months ago by brian.fristensky ▴ 460
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Answer: Answer: downloading (and using) a NCBI BLAST database
2.2 years ago by brian.fristensky ▴ 460
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867
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Answer: Answer: How to draw a phylogenetic tree with PHYLIP program for tumor samples
2.3 years ago by brian.fristensky ▴ 460
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964
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Comment: Comment: Is there a way to make the BLAST results easier to read?
2.6 years ago by brian.fristensky ▴ 460
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1.6k
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Answer: Answer: Opinions on publishing Research as a Blog?
2.8 years ago by brian.fristensky ▴ 460
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1
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3.1k
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Answer: Answer: Would this laptop be sufficient for small dataset/sequence analysis?
2.8 years ago by brian.fristensky ▴ 460
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546
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Tool: BIRCH Bioinformatics System v3.80
alignment RNA-seq genome assembly sequence phylogeny
2.8 years ago by brian.fristensky ▴ 460
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1.2k
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Answer: Answer: Gblocks file not opened error
2.8 years ago by brian.fristensky ▴ 460
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0
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2.4k
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Answer: Answer: Adapter trimming
2.8 years ago by brian.fristensky ▴ 460
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0
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2.6k
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Answer: Answer: How to loop to use trimmomatic for multiple fastq files?
2.8 years ago by brian.fristensky ▴ 460
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1
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2.0k
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Comment: Comment: compare two NCBI ftp tables
2.9 years ago by brian.fristensky ▴ 460
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3.2k
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Comment: Comment: how to run linux code in python
3.0 years ago by brian.fristensky ▴ 460
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2
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3.2k
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Answer: Answer: how to run linux code in python
3.0 years ago by brian.fristensky ▴ 460
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1.9k
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Comment: C: Blast + Alignement Shell Script
3.3 years ago by brian.fristensky ▴ 460
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1
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1.9k
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Answer: A: Blast + Alignement Shell Script
3.3 years ago by brian.fristensky ▴ 460
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1
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1.8k
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Comment: C: blast extract specific gene linux command
3.5 years ago by brian.fristensky ▴ 460
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891
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Answer: A: Redundancy removing in sequences
3.5 years ago by brian.fristensky ▴ 460
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1
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2.0k
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Answer: A: file and directory management best practices
3.7 years ago by brian.fristensky ▴ 460
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1
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3.2k
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Comment: C: Resources to learn genome assembly workflow for small genomes (like viruses)
3.7 years ago by brian.fristensky ▴ 460
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1
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3.2k
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Comment: C: Resources to learn genome assembly workflow for small genomes (like viruses)
3.7 years ago by brian.fristensky ▴ 460
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0
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1.7k
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Answer: A: Which tools do you miss?
3.7 years ago by brian.fristensky ▴ 460
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648
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News: Software: BIRCH Bioinformatics System 3.70
alignment Assembly sequence genome RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ▴ 460
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5.3k
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Answer: A: How to extract certain CDS from a GenBank file in linux terminal
3.8 years ago by brian.fristensky ▴ 460
2
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0
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1.2k
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Comment: A: Preferred cloud environment for genomics.
3.8 years ago by brian.fristensky ▴ 460
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3.7k
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Answer: A: how to run blastp against nr databse locally
3.8 years ago by brian.fristensky ▴ 460
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0
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1.9k
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Answer: A: Trimmomatic paired-end mode question
3.8 years ago by brian.fristensky ▴ 460
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0
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5.0k
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Answer: A: Size of the nr database fasta file?
3.8 years ago by brian.fristensky ▴ 460
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43k
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Answer: A: Intall local BLAST in Ubuntu
3.9 years ago by brian.fristensky ▴ 460
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0
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7.0k
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Answer: A: How to filter BLAST results by query coverage? How to analyze large BLAST output
3.9 years ago by brian.fristensky ▴ 460
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0
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1.8k
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Tutorial: VIDEO: Installing BLAST Databases on Your Own Computer
BLAST-databases Linux sequence MacOSX
updated 13 months ago by 43k • written 3.9 years ago by ▴ 460
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0
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1.0k
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Tutorial: VIDEO: BLAST Searches Through a Data Science Lens
Covid19 Data-Science sequence BLAST
updated 13 months ago by 43k • written 3.9 years ago by ▴ 460
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