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Answer: Answer: Trimmomatic
updated 17 months ago by 45k • written 17 months ago by ▴ 460
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Tool: BIRCH3.90 - BioLegato, Apple Silicon, Updates
genomics sequence transcriptomics
17 months ago by brian.fristensky ▴ 460
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Answer: Answer: How to launch MAUVE on Ubuntu 22?
18 months ago by brian.fristensky ▴ 460
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Answer: Answer: What's the general view on point & click bioinformatics for routine analyses?
2.3 years ago by brian.fristensky ▴ 460
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3.5k
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Answer: Answer: How big is the protein database on NCBI and how do I download it?
2.6 years ago by brian.fristensky ▴ 460
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1.7k
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Answer: Answer: Error running Trinity
2.6 years ago by brian.fristensky ▴ 460
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16k
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Comment: Comment: Laptops for bioinformatics
2.7 years ago by brian.fristensky ▴ 460
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1.5k
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Answer: Answer: Why an extremely large number of reads are mapped to several chromosomes in RNA-
2.7 years ago by brian.fristensky ▴ 460
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3.0k
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Answer: Answer: Renaming sequencing libraries
2.7 years ago by brian.fristensky ▴ 460
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12k
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Comment: Comment: what are the best resource to learn Linux bash scripting for Bioinformatics
2.7 years ago by brian.fristensky ▴ 460
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692
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Answer: Answer: Conceptual phylogenetics questions
2.8 years ago by brian.fristensky ▴ 460
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Comment: Comment: Auto label phylogenetic tree with species name or taxon name from taxon id on ne
2.8 years ago by brian.fristensky ▴ 460
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2.0k
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Comment: Comment: Best software to edit phylogeny trees
2.8 years ago by brian.fristensky ▴ 460
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1.6k
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Answer: Answer: Get one hit per specie in BLASTp
2.9 years ago by brian.fristensky ▴ 460
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2.5k
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Answer: Answer: phylip format sequence name/header issue
2.9 years ago by brian.fristensky ▴ 460
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2.7k
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Comment: Comment: fastq.gz download error
3.1 years ago by brian.fristensky ▴ 460
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5.2k
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Answer: Answer: How to translate CDS to an amino acid sequence
3.1 years ago by brian.fristensky ▴ 460
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608
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Tool: BIRCH Bioinformatics System v3.86
genomics sequence blast transcriptomics
3.1 years ago by brian.fristensky ▴ 460
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1.3k
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Comment: Comment: Ugene for Centos7
3.1 years ago by brian.fristensky ▴ 460
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1
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2.0k
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Answer: Answer: Most efficient command line tool for translating the DNA sequences into Protein
3.2 years ago by brian.fristensky ▴ 460
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10k
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Answer: Answer: downloading (and using) a NCBI BLAST database
3.4 years ago by brian.fristensky ▴ 460
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1.3k
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Answer: Answer: How to draw a phylogenetic tree with PHYLIP program for tumor samples
3.5 years ago by brian.fristensky ▴ 460
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1.4k
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Comment: Comment: Is there a way to make the BLAST results easier to read?
3.8 years ago by brian.fristensky ▴ 460
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1
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2.5k
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Answer: Answer: Opinions on publishing Research as a Blog?
4.0 years ago by brian.fristensky ▴ 460
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1
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4.1k
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Answer: Answer: Would this laptop be sufficient for small dataset/sequence analysis?
4.0 years ago by brian.fristensky ▴ 460
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0
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735
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Tool: BIRCH Bioinformatics System v3.80
alignment RNA-seq genome assembly sequence phylogeny
4.0 years ago by brian.fristensky ▴ 460
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1.7k
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Answer: Answer: Gblocks file not opened error
4.0 years ago by brian.fristensky ▴ 460
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0
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3.7k
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Answer: Answer: Adapter trimming
4.0 years ago by brian.fristensky ▴ 460
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0
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3.8k
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Answer: Answer: How to loop to use trimmomatic for multiple fastq files?
4.0 years ago by brian.fristensky ▴ 460
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1
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2.7k
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Comment: Comment: compare two NCBI ftp tables
4.1 years ago by brian.fristensky ▴ 460
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4.2k
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Comment: Comment: how to run linux code in python
4.2 years ago by brian.fristensky ▴ 460
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2
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4.2k
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Answer: Answer: how to run linux code in python
4.2 years ago by brian.fristensky ▴ 460
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2.6k
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Comment: C: Blast + Alignement Shell Script
4.5 years ago by brian.fristensky ▴ 460
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2.6k
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Answer: A: Blast + Alignement Shell Script
4.5 years ago by brian.fristensky ▴ 460
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3.0k
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Comment: C: blast extract specific gene linux command
4.7 years ago by brian.fristensky ▴ 460
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1.2k
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Answer: A: Redundancy removing in sequences
4.7 years ago by brian.fristensky ▴ 460
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4.2k
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Answer: A: file and directory management best practices
4.9 years ago by brian.fristensky ▴ 460
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1
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4.4k
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Comment: C: Resources to learn genome assembly workflow for small genomes (like viruses)
4.9 years ago by brian.fristensky ▴ 460
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1
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4.4k
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Comment: C: Resources to learn genome assembly workflow for small genomes (like viruses)
4.9 years ago by brian.fristensky ▴ 460
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2.6k
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Answer: A: Which tools do you miss?
4.9 years ago by brian.fristensky ▴ 460
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805
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News: Software: BIRCH Bioinformatics System 3.70
alignment Assembly sequence genome RNA-Seq
updated 2.1 years ago by 45k • written 5.0 years ago by ▴ 460
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6.5k
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Answer: A: How to extract certain CDS from a GenBank file in linux terminal
5.0 years ago by brian.fristensky ▴ 460
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1.5k
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Comment: A: Preferred cloud environment for genomics.
5.0 years ago by brian.fristensky ▴ 460
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5.3k
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Answer: A: how to run blastp against nr databse locally
5.0 years ago by brian.fristensky ▴ 460
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0
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2.5k
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Answer: A: Trimmomatic paired-end mode question
5.0 years ago by brian.fristensky ▴ 460
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7.4k
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Answer: A: Size of the nr database fasta file?
5.0 years ago by brian.fristensky ▴ 460
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0
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49k
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Answer: A: Intall local BLAST in Ubuntu
5.1 years ago by brian.fristensky ▴ 460
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0
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8.8k
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Answer: A: How to filter BLAST results by query coverage? How to analyze large BLAST output
5.1 years ago by brian.fristensky ▴ 460
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0
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2.2k
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Tutorial: VIDEO: Installing BLAST Databases on Your Own Computer
BLAST-databases Linux sequence MacOSX
updated 2.3 years ago by 45k • written 5.1 years ago by ▴ 460
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1.3k
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Tutorial: VIDEO: BLAST Searches Through a Data Science Lens
Covid19 Data-Science sequence BLAST
updated 2.3 years ago by 45k • written 5.1 years ago by ▴ 460
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