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Answer: Answer: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
8 months ago by jared.andrews07 ★ 16k
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455
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Answer: Answer: About batch effect in separate library preparation for multiple samples tested o
8 months ago by jared.andrews07 ★ 16k
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521
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Answer: Answer: Bioinformatics Workflow
8 months ago by jared.andrews07 ★ 16k
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841
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Answer: Answer: Choosing a cut-off for mitochondrial genes in brain scRNAseq
8 months ago by jared.andrews07 ★ 16k
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704
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Answer: Answer: circular heatmap in R Shiny
updated 8 months ago by 43k • written 8 months ago by ★ 16k
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643
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Answer: Answer: Cell Barcode Identification and Counting
updated 8 months ago by 43k • written 8 months ago by ★ 16k
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966
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Answer: Answer: CNA score calculation per cell
8 months ago by jared.andrews07 ★ 16k
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912
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Answer: Answer: How to get a list of gene names from macs2 peaks
8 months ago by jared.andrews07 ★ 16k
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679
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Answer: Answer: identify cell of origin from bulk RNAseq data
8 months ago by jared.andrews07 ★ 16k
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600
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Answer: Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
8 months ago by jared.andrews07 ★ 16k
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1.1k
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Answer: Answer: gseGO() --> No gene can be mapped
8 months ago by jared.andrews07 ★ 16k
3
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1.4k
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Answer: Answer: How to write a review article in bioinformatics
8 months ago by jared.andrews07 ★ 16k
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492
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Answer: Answer: Neuronal markers are expressed in all cell types in 10X single-cell RNASeq
9 months ago by jared.andrews07 ★ 16k
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348
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Answer: Answer: Gene signature into scoring method
9 months ago by jared.andrews07 ★ 16k
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2
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1.8k
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Answer: Answer: Typical Volcano Plot for DGE
9 months ago by jared.andrews07 ★ 16k
2
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1
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655
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Answer: Answer: Integrate transcriptomics and CNV
9 months ago by jared.andrews07 ★ 16k
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1
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5.0k
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Answer: Answer: Help with DiffBind Generating report-based DBA object... Error: No valid contras
9 months ago by jared.andrews07 ★ 16k
2
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2
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1.4k
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Answer: Answer: Heatmap for ATAC-seq
9 months ago by jared.andrews07 ★ 16k
4
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1
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2.4k
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Answer: Answer: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
9 months ago by jared.andrews07 ★ 16k
2
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1
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1.6k
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Answer: Answer: Leiden algorithm not working R studio scRNAseq
9 months ago by jared.andrews07 ★ 16k
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0
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560
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Answer: Answer: Peak calling a general bed file (not reads)
10 months ago by jared.andrews07 ★ 16k
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0
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1.7k
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Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
11 months ago by jared.andrews07 ★ 16k
3
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1
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666
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Answer: Answer: Does ROSE include traditional enhancer in the analysis output?
12 months ago by jared.andrews07 ★ 16k
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1.6k
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Answer: Answer: How can I make all my PCA plots the same shape using ggplots?
12 months ago by jared.andrews07 ★ 16k
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0
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777
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Answer: Answer: Why can’t we have full-length transcripts with droplet-based technologies ?
13 months ago by jared.andrews07 ★ 16k
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1.4k
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Answer: Answer: ExomeDepth installation error
13 months ago by jared.andrews07 ★ 16k
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0
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675
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Answer: Answer: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15t
13 months ago by jared.andrews07 ★ 16k
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0
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570
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Answer: Answer: If using singeR return more clusters than available ones should I do reclusterin
14 months ago by jared.andrews07 ★ 16k
3
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1
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513
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Answer: Answer: How to quantify the reads of each peak for ChIP-seq data?
14 months ago by jared.andrews07 ★ 16k
2
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0
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667
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Answer: Answer: How to quantify the reads of peaks?
14 months ago by jared.andrews07 ★ 16k
3
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916
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Answer: Answer: Can FPKM data sets be of any use or are they trash?
14 months ago by jared.andrews07 ★ 16k
3
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1.2k
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Answer: Answer: Use single cell sequencing bam file to tell if a patient has a mutation
14 months ago by jared.andrews07 ★ 16k
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0
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445
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Answer: Answer: Pearson correlation coefficients of histone modifications at specific region
14 months ago by jared.andrews07 ★ 16k
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0
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969
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Answer: Answer: singleR annotation shows overlapping clusters
14 months ago by jared.andrews07 ★ 16k
2
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524
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Answer: Answer: Normalizing chip-seq signals with different number of peaks
14 months ago by jared.andrews07 ★ 16k
2
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1
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1.1k
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Answer: Answer: extracting input files form Seurat
15 months ago by jared.andrews07 ★ 16k
3
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0
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565
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Answer: Answer: Do I need to correct for sequencing depth in bulk RNA seq?
15 months ago by jared.andrews07 ★ 16k
2
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1.0k
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Answer: Answer: Processed RNA seq data publicly available
15 months ago by jared.andrews07 ★ 16k
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0
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880
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Answer: Answer: What is the best way to convert gene symbols into ensembl and other ids in Pytho
15 months ago by jared.andrews07 ★ 16k
2
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1
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1.5k
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Answer: Answer: How do I subset data in R with a list of variable names?
16 months ago by jared.andrews07 ★ 16k
2
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0
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491
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Answer: Answer: General questions concerning mathylation analysis
16 months ago by jared.andrews07 ★ 16k
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2
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3.5k
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Answer: Answer: CUT&Tag data processing: peak caller choice and typical peak size profile
16 months ago by jared.andrews07 ★ 16k
2
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0
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634
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Answer: Answer: Analyzing time-series RNA-seq data using DEseq2
16 months ago by jared.andrews07 ★ 16k
2
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2
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1.2k
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Answer: Answer: How to interpret the nine-square plot from mageckFlute
17 months ago by jared.andrews07 ★ 16k
2
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0
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631
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Answer: Answer: ENCODE peaks files - do I use the IDR files?
17 months ago by jared.andrews07 ★ 16k
0
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0
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1.5k
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Answer: Answer: EdgeR installation in Mac 1 Pro (M1 chip) using Studio
17 months ago by jared.andrews07 ★ 16k
3
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1
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1.1k
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Answer: Answer: Subsetting DGEList object for for a list of genes of interest
17 months ago by jared.andrews07 ★ 16k
3
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0
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2.8k
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Answer: Answer: How to resolve conda package conflicts when I try to build an environment for NL
17 months ago by jared.andrews07 ★ 16k
1
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1
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1.6k
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Answer: Answer: How do I know if I'm overcorrecting my single cell data
18 months ago by jared.andrews07 ★ 16k
3
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1
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2.1k
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Answer: Answer: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by jared.andrews07 ★ 16k
603 results • Page 2 of 13
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