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Answer: A: First thing to do when you receive your sequenced genome of interest.
updated 5.8 years ago by 45k • written 11.4 years ago by ★ 1.3k
2
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1
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Answer: A: What size should I expect from a SFF file?
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.3k
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2
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Answer: A: TRF output to .gff file
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.3k
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0
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Answer: A: How to check whether a genome is circular
updated 5.9 years ago by 45k • written 10.0 years ago by ★ 1.3k
1
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0
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17k
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Comment: C: Aligning Sequence Reads, Clone Sequences And Assembly Contigs With Bwa-Mem
updated 6.1 years ago by 45k • written 12.6 years ago by ★ 1.3k
2
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1
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Answer: A: 454 Order Of Contigs Assembly And Mapping
updated 6.1 years ago by 45k • written 13.6 years ago by ★ 1.3k
2
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0
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5.7k
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Answer: A: Extracting A Sequence By Position Using Perl
updated 6.2 years ago by 45k • written 14.7 years ago by ★ 1.3k
3
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0
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4.6k
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Answer: A: Simulate Sff File
updated 6.2 years ago by 45k • written 14.9 years ago by ★ 1.3k
9
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0
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3.6k
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Answer: A: Order Sequences By Number Of Times Found
updated 7.2 years ago by 45k • written 15.4 years ago by ★ 1.3k
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1
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8.3k
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Answer: A: Is Newbler still available for download
8.4 years ago by lexnederbragt ★ 1.3k
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0
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2.2k
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Answer: A: Getting reads contributing to a velvet assembly - contig
8.9 years ago by lexnederbragt ★ 1.3k
1
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0
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2.8k
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Answer: A: Evaluation of PacBio only de novo assembly
9.1 years ago by lexnederbragt ★ 1.3k
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0
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2.8k
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Answer: A: Cleaning FASTQ files containing a contamination sequence.
9.1 years ago by lexnederbragt ★ 1.3k
0
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1
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7.4k
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Answer: A: Newbler 3 assembler download - assembly of highly heterozygous genome
9.2 years ago by lexnederbragt ★ 1.3k
3
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1
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39k
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Comment: C: New Fasta Sequence From Reference Fasta And Variant Calls File?
9.8 years ago by lexnederbragt ★ 1.3k
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0
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7.6k
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Comment: C: How to check whether a genome is circular
10.0 years ago by lexnederbragt ★ 1.3k
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0
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2.4k
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Answer: A: alternative to quiver
10.0 years ago by lexnederbragt ★ 1.3k
1
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1
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5.0k
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Answer: A: Tool for PacBio Denovo assembly of diploid plant genome (size 500mb) having aro
10.1 years ago by lexnederbragt ★ 1.3k
2
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1
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11k
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Answer: Answer: Install HGAP for de novo PacBio Assembly
updated 3.2 years ago by 45k • written 10.2 years ago by ★ 1.3k
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0
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2.1k
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Answer: Answer: 454 sequencing: DETAILED explanation??
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.3k
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0
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2.0k
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Answer: Answer: problem with newbler(error)
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.3k
2
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1
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3.8k
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Answer: A: velvet user manual - node lengths????
10.5 years ago by lexnederbragt ★ 1.3k
1
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1
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3.1k
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Answer: A: Newbler seems stop
10.6 years ago by lexnederbragt ★ 1.3k
0
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1
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3.1k
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Comment: Comment: Newbler seems stop
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.3k
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1
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3.1k
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Comment: C: Newbler seems stop
10.6 years ago by lexnederbragt ★ 1.3k
0
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1
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3.2k
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Answer: Answer: Plasmid Detection in the SMRT/PacBios data
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.3k
2
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0
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7.7k
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Answer: A: What are the best approaches to evaluate a genome assembly using the 'intrinsic'
10.9 years ago by lexnederbragt ★ 1.3k
9
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1
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19k
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Answer: A: Best software to assemble bacterial genomes
11.0 years ago by lexnederbragt ★ 1.3k
1
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1
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9.6k
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Comment: C: Roche 454: How to know if reads are paired ?
11.2 years ago by lexnederbragt ★ 1.3k
0
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0
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8.2k
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Comment: C: Identify short repeats in DNA sequence?
11.2 years ago by lexnederbragt ★ 1.3k
0
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1
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4.5k
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Answer: Answer: Paired-end 454 data - forward run consisting only of TCAG
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 1.3k
0
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0
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6.4k
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Comment: C: Newbler: Merged Miseq Reads + Mate Pairs?
11.6 years ago by lexnederbragt ★ 1.3k
0
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1
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6.4k
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Comment: C: Newbler: Merged Miseq Reads + Mate Pairs?
11.6 years ago by lexnederbragt ★ 1.3k
0
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1
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6.4k
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Comment: C: Newbler: Merged Miseq Reads + Mate Pairs?
11.6 years ago by lexnederbragt ★ 1.3k
2
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0
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3.0k
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Answer: Answer: De Novo Genome Assembler Preferring Shorter Error-Free Contigs
updated 3.6 years ago by 45k • written 11.6 years ago by ★ 1.3k
1
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1
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6.4k
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Answer: A: Newbler: Merged Miseq Reads + Mate Pairs?
11.6 years ago by lexnederbragt ★ 1.3k
7
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0
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25k
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Answer: A: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
11.8 years ago by lexnederbragt ★ 1.3k
1
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0
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2.9k
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Comment: C: Is There A Way To Obtain Sffile Or Software Suite Provided By 454
12.0 years ago by lexnederbragt ★ 1.3k
2
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1
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17k
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Comment: C: Pacbio Ccs Vs Subreads Explained ?
12.0 years ago by lexnederbragt ★ 1.3k
0
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0
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8.5k
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Comment: C: Bioinformatics: How To Version Control Small Scripts Located All Over The Server
12.1 years ago by lexnederbragt ★ 1.3k
0
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1
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8.5k
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Comment: C: Bioinformatics: How To Version Control Small Scripts Located All Over The Server
12.1 years ago by lexnederbragt ★ 1.3k
0
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1
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6.5k
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Comment: C: Can I Compile Velvet For K-Mer Of 201?
12.1 years ago by lexnederbragt ★ 1.3k
0
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0
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14k
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Comment: C: Pacbio Quiver Consensus - How To Use?
12.4 years ago by lexnederbragt ★ 1.3k
0
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0
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3.5k
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Answer: A: Python Check Correct Bam Or Correct Fastq Format
12.5 years ago by lexnederbragt ★ 1.3k
2
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1
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3.8k
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Comment: C: Do I Need To Perform Scaffolding For Reference Based Assembly Result ?
12.7 years ago by lexnederbragt ★ 1.3k
0
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1
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6.2k
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Comment: C: Pacbio Rna-Seq Protocol
12.9 years ago by lexnederbragt ★ 1.3k
0
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0
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7.6k
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Comment: C: Sra Toolkit For Pacbio
12.9 years ago by lexnederbragt ★ 1.3k
1
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0
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4.9k
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Answer: A: Cap3 Integration Of Velvet And Newbler Assemblies
13.0 years ago by lexnederbragt ★ 1.3k
0
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0
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36k
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Comment: C: Fastq Quality Control Shootout
13.1 years ago by lexnederbragt ★ 1.3k
2
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0
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3.4k
views
Answer: A: Empty Output With Pacbiotoca
updated 13.1 years ago by 103k • written 13.1 years ago by ★ 1.3k
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