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Answer: A: First thing to do when you receive your sequenced genome of interest.
updated 3.4 years ago by 39k • written 9.0 years ago by ★ 1.3k
2
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1
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Answer: A: What size should I expect from a SFF file?
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 1.3k
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2
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Answer: A: TRF output to .gff file
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 1.3k
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0
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Answer: A: How to check whether a genome is circular
updated 3.5 years ago by 39k • written 7.5 years ago by ★ 1.3k
2
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1
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3.5k
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Answer: A: 454 Order Of Contigs Assembly And Mapping
updated 3.7 years ago by 39k • written 11.2 years ago by ★ 1.3k
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Answer: A: Extracting A Sequence By Position Using Perl
updated 3.7 years ago by 39k • written 12.3 years ago by ★ 1.3k
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Answer: A: Simulate Sff File
updated 3.7 years ago by 39k • written 12.5 years ago by ★ 1.3k
9
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Answer: A: Order Sequences By Number Of Times Found
updated 4.7 years ago by 39k • written 13.0 years ago by ★ 1.3k
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6.1k
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Answer: A: Is Newbler still available for download
5.9 years ago by lexnederbragt ★ 1.3k
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1.6k
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Answer: A: Getting reads contributing to a velvet assembly - contig
6.5 years ago by lexnederbragt ★ 1.3k
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2.1k
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Answer: A: Evaluation of PacBio only de novo assembly
6.6 years ago by lexnederbragt ★ 1.3k
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2.3k
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Answer: A: Cleaning FASTQ files containing a contamination sequence.
6.7 years ago by lexnederbragt ★ 1.3k
0
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1
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5.7k
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Answer: A: Newbler 3 assembler download - assembly of highly heterozygous genome
6.8 years ago by lexnederbragt ★ 1.3k
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2.0k
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Answer: A: alternative to quiver
7.5 years ago by lexnederbragt ★ 1.3k
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1
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3.5k
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Answer: A: Tool for PacBio Denovo assembly of diploid plant genome (size 500mb) having aro
7.7 years ago by lexnederbragt ★ 1.3k
2
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1
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9.0k
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Answer: Answer: Install HGAP for de novo PacBio Assembly
updated 8 months ago by 39k • written 7.7 years ago by ★ 1.3k
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Answer: Answer: 454 sequencing: DETAILED explanation??
updated 8 months ago by 39k • written 7.7 years ago by ★ 1.3k
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1.6k
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Answer: Answer: problem with newbler(error)
updated 5 months ago by 39k • written 7.9 years ago by ★ 1.3k
2
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1
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2.9k
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Answer: A: velvet user manual - node lengths????
8.0 years ago by lexnederbragt ★ 1.3k
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2.0k
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Answer: A: Newbler seems stop
8.1 years ago by lexnederbragt ★ 1.3k
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1
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2.5k
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Answer: Answer: Plasmid Detection in the SMRT/PacBios data
updated 13 months ago by 39k • written 8.3 years ago by ★ 1.3k
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0
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Answer: A: What are the best approaches to evaluate a genome assembly using the 'intrinsic'
8.5 years ago by lexnederbragt ★ 1.3k
9
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Answer: A: Best software to assemble bacterial genomes
8.5 years ago by lexnederbragt ★ 1.3k
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Answer: Answer: Paired-end 454 data - forward run consisting only of TCAG
updated 17 months ago by 39k • written 8.8 years ago by ★ 1.3k
2
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0
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Answer: Answer: De Novo Genome Assembler Preferring Shorter Error-Free Contigs
updated 14 months ago by 39k • written 9.2 years ago by ★ 1.3k
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1
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5.2k
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Answer: A: Newbler: Merged Miseq Reads + Mate Pairs?
9.2 years ago by lexnederbragt ★ 1.3k
7
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0
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20k
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Answer: A: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
9.3 years ago by lexnederbragt ★ 1.3k
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2.6k
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Answer: A: Python Check Correct Bam Or Correct Fastq Format
10.0 years ago by lexnederbragt ★ 1.3k
1
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0
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4.0k
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Answer: A: Cap3 Integration Of Velvet And Newbler Assemblies
10.5 years ago by lexnederbragt ★ 1.3k
2
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0
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2.6k
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Answer: A: Empty Output With Pacbiotoca
updated 10.7 years ago by 98k • written 10.7 years ago by ★ 1.3k
2
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1
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5.1k
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Answer: A: Pacbio Rna-Seq Protocol
10.8 years ago by lexnederbragt ★ 1.3k
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0
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2.5k
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Answer: A: Puzzle - Strange Contig Assembly In Newbler - Trimmed Ends
11.0 years ago by lexnederbragt ★ 1.3k
9
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1
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6.1k
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Answer: A: What Does Agp Stand For?
updated 11.1 years ago by 18k • written 11.1 years ago by ★ 1.3k
1
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0
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3.4k
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Answer: A: De Novo Assembly With 1X Coverage?
11.2 years ago by lexnederbragt ★ 1.3k
3
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0
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2.5k
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Answer: A: Quality Scores 454
11.3 years ago by lexnederbragt ★ 1.3k
2
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1
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11k
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Answer: A: Cut The Reads Of A Paired End Fastq File
11.5 years ago by lexnederbragt ★ 1.3k
1
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4
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2.7k
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Answer: A: Newbler 454Trimstatus.Txt
11.5 years ago by lexnederbragt ★ 1.3k
1
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0
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4.4k
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Answer: A: Transcripome Data Analysis Using Cd-Hits
11.5 years ago by lexnederbragt ★ 1.3k
2
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0
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1.9k
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Answer: A: Newbler Statistics
11.7 years ago by lexnederbragt ★ 1.3k
1
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2
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6.7k
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Answer: A: Detecting Polyploidy Using An Assembly
11.7 years ago by lexnederbragt ★ 1.3k
1
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0
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2.5k
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Answer: A: Is There A Way To Convert Gs Mapper Output To Bam File?
11.7 years ago by lexnederbragt ★ 1.3k
1
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0
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2.7k
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Answer: A: Genbank Annotation Liftover Between Prokaryote Genomes
11.8 years ago by lexnederbragt ★ 1.3k
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0
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4.8k
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Answer: A: Sfffile Program Of Roche 454
12.0 years ago by lexnederbragt ★ 1.3k
9
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3
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18k
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Answer: A: Circular Genome??
12.2 years ago by lexnederbragt ★ 1.3k
2
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0
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2.2k
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Answer: A: What Is The Optimal Number Of Cpus For Newbler?
12.4 years ago by lexnederbragt ★ 1.3k
1
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0
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6.5k
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Answer: A: Denovo Assembly/Scafolding Pipeline(S) For The Eukaryote Genome: Single End Illu
12.5 years ago by lexnederbragt ★ 1.3k
1
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0
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2.8k
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Answer: A: 454 Gap Closures
12.5 years ago by lexnederbragt ★ 1.3k
4
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2
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24k
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Answer: A: Where Do I Find The 16S Rdna Reference Sequences (Metagenomics)
12.7 years ago by lexnederbragt ★ 1.3k
8
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0
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24k
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Answer: A: Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
12.9 years ago by lexnederbragt ★ 1.3k
2
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2
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6.2k
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Answer: A: How To Close Gaps In A 454 Assembly In Silico?
13.0 years ago by lexnederbragt ★ 1.3k
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