Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
748
views
Tool: Modernized RNA-MuTect pipeline for tumor-only RNA-seq somatic variant calling
somatic rna-seq
5 weeks ago by darklings ▴ 590
2
votes
5
replies
2.4k
views
SNPs of a specific mouse strain
snp
updated 12 months ago by ▴ 10 • written 23 months ago by ▴ 590
0
votes
0
replies
2.4k
views
Answer: Answer: SNPs of a specific mouse strain
23 months ago by darklings ▴ 590
0
votes
0
replies
2.4k
views
Comment: Comment: SNPs of a specific mouse strain
23 months ago by darklings ▴ 590
0
votes
1
reply
1.5k
views
Answer: Answer: How to delete part of row names in a list in linux
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 590
0
votes
0
replies
2.4k
views
Comment: Comment: Obtaining directionality of pathways
3.0 years ago by darklings ▴ 590
5
votes
0
replies
1.3k
views
Answer: Answer: How to get experience as a bioinformatics software developer
3.6 years ago by darklings ▴ 590
1
vote
1
reply
3.9k
views
Comment: Comment: genefu for PAM50 prediction
3.6 years ago by darklings ▴ 590
0
votes
0
replies
3.2k
views
Answer: Answer: how can i convert my gene list to a format that reactome recognises?
4.3 years ago by darklings ▴ 590
0
votes
0
replies
5.8k
views
Comment: Comment: Looping over a function in R, and needing a variable name to save output as uniq
4.4 years ago by darklings ▴ 590
0
votes
1
reply
5.8k
views
Comment: Comment: Looping over a function in R, and needing a variable name to save output as uniq
4.4 years ago by darklings ▴ 590
1
vote
1
reply
5.8k
views
Answer: Answer: Looping over a function in R, and needing a variable name to save output as uniq
4.4 years ago by darklings ▴ 590
1
vote
0
replies
3.0k
views
Answer: Answer: How to find the functions of Reactome pathways?
4.4 years ago by darklings ▴ 590
0
votes
0
replies
20k
views
Comment: Comment: "[E::bgzf_read] Read block operation failed" error - possible truncation/corrupt
4.5 years ago by darklings ▴ 590
1
vote
1
reply
20k
views
Comment: Comment: "[E::bgzf_read] Read block operation failed" error - possible truncation/corrupt
4.5 years ago by darklings ▴ 590
0
votes
0
replies
3.3k
views
Comment: Comment: How can I join multiple columns from different datasets together in R?
4.5 years ago by darklings ▴ 590
0
votes
1
reply
1.3k
views
Answer: Answer: TWAS analysis
4.5 years ago by darklings ▴ 590
0
votes
0
replies
2.9k
views
Answer: Answer: Using R Studio on Cloud
4.5 years ago by darklings ▴ 590
0
votes
0
replies
1.1k
views
Comment: Comment: Predicting Drug responds from somatic mutations
4.5 years ago by darklings ▴ 590
0
votes
0
replies
2.4k
views
Answer: Answer: Diseases related pathways
4.5 years ago by darklings ▴ 590
1
vote
0
replies
1.7k
views
Comment: Comment: Reactome website gene expression analysis
4.6 years ago by darklings ▴ 590
0
votes
0
replies
2.5k
views
Comment: Comment: Convert multiple rows value retrieved from ensemble biomart to comma separated
4.6 years ago by darklings ▴ 590
1
vote
0
replies
6.5k
views
Answer: Answer: Getting all gene members in a Reactome Pathway
4.6 years ago by darklings ▴ 590
0
votes
0
replies
1.5k
views
Answer: Answer: Reactome reaction enumeration with DefinedSets
4.6 years ago by darklings ▴ 590
0
votes
0
replies
2.8k
views
Comment: Comment: How to add space in specific location in a barplot using ggplot2
4.6 years ago by darklings ▴ 590
0
votes
1
reply
2.8k
views
Comment: Comment: How to add space in specific location in a barplot using ggplot2
4.6 years ago by darklings ▴ 590
0
votes
0
replies
2.4k
views
Answer: Answer: Reactome Pathway Analysis from command line
4.6 years ago by darklings ▴ 590
3
votes
0
replies
7.4k
views
Answer: A: Is there a way to visualize log fold changes for Reactome pathways in R?
4.7 years ago by darklings ▴ 590
0
votes
0
replies
1.3k
views
Answer: A: overlay of DE data on reactome pathway
4.7 years ago by darklings ▴ 590
0
votes
0
replies
3.6k
views
Answer: Answer: Graph viewer for Reactome Pathways
updated 2.9 years ago by 45k • written 4.7 years ago by ▴ 590
1
vote
0
replies
1.9k
views
Comment: C: Annotating gene names: Why having different number of ensembl IDs using biomaRt
updated 4.8 years ago by 45k • written 4.8 years ago by ▴ 590
16
votes
6
replies
48k
views
Answer: A: installing samtools with conda - overcoming two common errors
4.9 years ago by darklings ▴ 590
1
vote
0
replies
1.6k
views
Answer: A: Incomplete reactome.org all pathway level to ENSEMBL ID annotation files
5.0 years ago by darklings ▴ 590
2
votes
0
replies
2.7k
views
Comment: C: Is it good to merge transcripts tpm to gene which is of different gene type?
5.0 years ago by darklings ▴ 590
10
votes
8
replies
6.4k
views
Which RNA-seq unit should be used in machine learning models?
RNA-Seq machine learning counts
5.0 years ago by darklings ▴ 590
2
votes
0
replies
2.5k
views
Answer: A: How can I know when a pathway was included in Reactome?
5.0 years ago by darklings ▴ 590
0
votes
1
reply
7.6k
views
Comment: C: Is there a way to get the name or IDs of genes with the goseq table?
5.7 years ago by darklings ▴ 590
0
votes
0
replies
1.4k
views
Comment: C: Getting information about shortening or lengthening of UTRs from RNAseq data
5.8 years ago by darklings ▴ 590
0
votes
0
replies
42k
views
Comment: C: output TMM normalized counts with edgeR
5.8 years ago by darklings ▴ 590
8
votes
2
replies
7.6k
views
Answer: A: Is there a way to get the name or IDs of genes with the goseq table?
5.9 years ago by darklings ▴ 590
0
votes
0
replies
2.2k
views
Comment: C: How to interpret the eQTLs in cancer
5.9 years ago by darklings ▴ 590
0
votes
2
replies
2.2k
views
How to interpret the eQTLs in cancer
RNA-Seq SNP eqtl TCGA
updated 6.0 years ago by ▴ 40 • written 6.9 years ago by ▴ 590
0
votes
1
reply
15k
views
Comment: C: Best-suited unit of expression to perform between-sample comparison
6.3 years ago by darklings ▴ 590
1
vote
1
reply
15k
views
Comment: C: Best-suited unit of expression to perform between-sample comparison
6.3 years ago by darklings ▴ 590
2
votes
1
reply
3.9k
views
Answer: A: genefu for PAM50 prediction
6.3 years ago by darklings ▴ 590
5
votes
1
reply
6.4k
views
Answer: A: What kind of unit of RNA-seq should be used in machine learning models?
6.3 years ago by darklings ▴ 590
0
votes
0
replies
6.4k
views
Comment: C: What kind of unit of RNA-seq should be used in machine learning models?
6.3 years ago by darklings ▴ 590
0
votes
0
replies
3.1k
views
Comment: C: issues with GTEx data annotation files
6.8 years ago by darklings ▴ 590
0
votes
1
reply
3.1k
views
Comment: C: issues with GTEx data annotation files
6.8 years ago by darklings ▴ 590
0
votes
1
reply
211k
views
Comment: C: How To Update R In Ubuntu ?
7.0 years ago by darklings ▴ 590
63 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6