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HaplotypeCaller VCF depth is greater than the number of reads in bam
HaplotypeCaller vcf gatk
updated 2.2 years ago by ▴ 10 • written 4.2 years ago by ▴ 10
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Could bcftools output GQ for homozygous REF call?
samtools gvcf genotype bcftools
4.2 years ago by wang.yiguan ▴ 10
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Comment: Comment: HaplotypeCaller VCF depth is greater than the number of reads in bam
4.2 years ago by wang.yiguan ▴ 10
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1.7k
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Comment: Comment: GATK no "SB" annotation after GenotypeGVCFs
4.2 years ago by wang.yiguan ▴ 10
1
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2
replies
1.7k
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GATK no "SB" annotation after GenotypeGVCFs
gatk strandbias
4.2 years ago by wang.yiguan ▴ 10
2
votes
1
reply
1.3k
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How to filter paired-end reads to detect inversions according to insert size
genome next-gen alignment
5.9 years ago by wang.yiguan ▴ 10
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0
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1.8k
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Comment: C: Get full sequence from sorted bam file
7.1 years ago by wang.yiguan ▴ 10
1
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2
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1.8k
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Get full sequence from sorted bam file
Assembly alignment sequencing
7.1 years ago by wang.yiguan ▴ 10
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0
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1.4k
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why JGIL no output
sequencing genome alignment
7.5 years ago by wang.yiguan ▴ 10
1
vote
1
reply
2.5k
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Can I estimate recombination rate based on LD
genome sequencing
7.6 years ago by wang.yiguan ▴ 10
2
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1
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3.1k
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How to decide ancestral allele
genome alignment
updated 7.6 years ago by 56k • written 7.6 years ago by ▴ 10
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0
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2.2k
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Answer: A: PopGenome readMS error
8.0 years ago by wang.yiguan ▴ 10
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