Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.3k
views
Comment: Comment: Error correction based on PCR duplicates using clumpify.sh
3.8 years ago by lechu ▴ 20
1
vote
2
replies
1.3k
views
Error correction based on PCR duplicates using clumpify.sh
RNAseq bbmap duplicates clumpify
3.8 years ago by lechu ▴ 20
0
votes
1
reply
877
views
Clipping bases from non-overlapping regions of mate reads in BAM file
RNAseq
updated 3.9 years ago by 166k • written 3.9 years ago by ▴ 20
0
votes
0
replies
3.5k
views
Comment: C: Soft-clipping of a BAM file based on regions from the BED file
4.7 years ago by lechu ▴ 20
0
votes
1
reply
3.5k
views
Comment: C: Soft-clipping of a BAM file based on regions from the BED file
4.7 years ago by lechu ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: clipOverlap from BamUtil modifies CIGAR string => error in GATK
4.7 years ago by lechu ▴ 20
1
vote
5
replies
3.5k
views
Soft-clipping of a BAM file based on regions from the BED file
rna-seq
updated 4.6 years ago by 166k • written 4.7 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Answer: A: clipOverlap from BamUtil modifies CIGAR string => error in GATK
4.7 years ago by lechu ▴ 20
0
votes
1
reply
1.9k
views
Comment: C: Annotating reads with the name of the feature to which they map
4.7 years ago by lechu ▴ 20
0
votes
0
replies
991
views
Adding information tags with types, positions and counts of matches and mismatches in every read in the SAM file
RNA-Seq
4.7 years ago by lechu ▴ 20
0
votes
1
reply
1.9k
views
Comment: C: Annotating reads with the name of the feature to which they map
4.7 years ago by lechu ▴ 20
0
votes
0
replies
637
views
How to get coverage for specific base(s), and for specific mismatch(es) per genomic range
RNA-Seq
4.7 years ago by lechu ▴ 20
2
votes
5
replies
1.9k
views
Annotating reads with the name of the feature to which they map
RNA-Seq
updated 4.7 years ago by ★ 2.7k • written 4.7 years ago by ▴ 20
0
votes
0
replies
821
views
Mapping long RNAseq reads to genome with nextGenMap - how to adjust parameters?
RNA-Seq
4.7 years ago by lechu ▴ 20
0
votes
0
replies
2.2k
views
Comment: C: How to modify a BAM file to avoid double-counting of variants from overlapping P
4.8 years ago by lechu ▴ 20
0
votes
1
reply
2.2k
views
Comment: A: How to modify a BAM file to avoid double-counting of variants from overlapping P
4.8 years ago by lechu ▴ 20
0
votes
6
replies
2.2k
views
How to modify a BAM file to avoid double-counting of variants from overlapping PE reads?
RNA-Seq BSseq
4.8 years ago by lechu ▴ 20
0
votes
1
reply
2.2k
views
Comment: A: How to modify a BAM file to avoid double-counting of variants from overlapping P
4.8 years ago by lechu ▴ 20
0
votes
0
replies
1.6k
views
Comment: C: Merging overlapping mates in a BAM / SAM file into one read
4.8 years ago by lechu ▴ 20
1
vote
1
reply
49k
views
Comment: A: Tools to merge overlapping paired-end reads
4.8 years ago by lechu ▴ 20
0
votes
0
replies
2.6k
views
Comment: C: combining / merging overlapping reads in bam file to one in silico long read
4.8 years ago by lechu ▴ 20
1
vote
2
replies
49k
views
Comment: C: Tools to merge overlapping paired-end reads
4.8 years ago by lechu ▴ 20
0
votes
2
replies
1.6k
views
Merging overlapping mates in a BAM / SAM file into one read
RNA-Seq
4.8 years ago by lechu ▴ 20
0
votes
1
reply
2.3k
views
Comment: C: Trimmomatic-0.36 is generating empty files
8.2 years ago by lechu ▴ 20
0
votes
0
replies
3.9k
views
Comment: C: Help with Fastqc error
8.3 years ago by lechu ▴ 20
0
votes
1
reply
3.9k
views
Comment: C: Help with Fastqc error
8.3 years ago by lechu ▴ 20
0
votes
1
reply
3.9k
views
Comment: A: Fastqc error. please help me.
8.3 years ago by lechu ▴ 20
27 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6