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Comment: Comment: Error correction based on PCR duplicates using clumpify.sh
2.3 years ago by lechu ▴ 20
1
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2
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687
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Error correction based on PCR duplicates using clumpify.sh
RNAseq bbmap duplicates clumpify
2.3 years ago by lechu ▴ 20
0
votes
1
reply
547
views
Clipping bases from non-overlapping regions of mate reads in BAM file
RNAseq
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 20
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0
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2.4k
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Comment: C: Soft-clipping of a BAM file based on regions from the BED file
3.1 years ago by lechu ▴ 20
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1
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2.4k
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Comment: C: Soft-clipping of a BAM file based on regions from the BED file
3.1 years ago by lechu ▴ 20
0
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0
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880
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Comment: C: clipOverlap from BamUtil modifies CIGAR string => error in GATK
3.1 years ago by lechu ▴ 20
1
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5
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2.4k
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Soft-clipping of a BAM file based on regions from the BED file
rna-seq
updated 3.1 years ago by 161k • written 3.1 years ago by ▴ 20
0
votes
1
reply
880
views
Answer: A: clipOverlap from BamUtil modifies CIGAR string => error in GATK
3.1 years ago by lechu ▴ 20
0
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1
reply
992
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Comment: C: Annotating reads with the name of the feature to which they map
3.2 years ago by lechu ▴ 20
0
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0
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727
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Adding information tags with types, positions and counts of matches and mismatches in every read in the SAM file
RNA-Seq
3.2 years ago by lechu ▴ 20
0
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1
reply
992
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Comment: C: Annotating reads with the name of the feature to which they map
3.2 years ago by lechu ▴ 20
0
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0
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430
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How to get coverage for specific base(s), and for specific mismatch(es) per genomic range
RNA-Seq
3.2 years ago by lechu ▴ 20
2
votes
5
replies
992
views
Annotating reads with the name of the feature to which they map
RNA-Seq
updated 3.2 years ago by ★ 2.7k • written 3.2 years ago by ▴ 20
0
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0
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575
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Mapping long RNAseq reads to genome with nextGenMap - how to adjust parameters?
RNA-Seq
3.2 years ago by lechu ▴ 20
0
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0
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1.3k
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Comment: C: How to modify a BAM file to avoid double-counting of variants from overlapping P
3.2 years ago by lechu ▴ 20
0
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1
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1.3k
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Comment: A: How to modify a BAM file to avoid double-counting of variants from overlapping P
3.2 years ago by lechu ▴ 20
0
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6
replies
1.3k
views
How to modify a BAM file to avoid double-counting of variants from overlapping PE reads?
RNA-Seq BSseq
3.2 years ago by lechu ▴ 20
0
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1
reply
1.3k
views
Comment: A: How to modify a BAM file to avoid double-counting of variants from overlapping P
3.2 years ago by lechu ▴ 20
0
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0
replies
1.0k
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Comment: C: Merging overlapping mates in a BAM / SAM file into one read
3.2 years ago by lechu ▴ 20
1
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1
reply
43k
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Comment: A: Tools to merge overlapping paired-end reads
3.2 years ago by lechu ▴ 20
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0
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1.7k
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Comment: C: combining / merging overlapping reads in bam file to one in silico long read
3.2 years ago by lechu ▴ 20
1
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2
replies
43k
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Comment: C: Tools to merge overlapping paired-end reads
3.2 years ago by lechu ▴ 20
0
votes
2
replies
1.0k
views
Merging overlapping mates in a BAM / SAM file into one read
RNA-Seq
3.2 years ago by lechu ▴ 20
0
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1
reply
1.8k
views
Comment: C: Trimmomatic-0.36 is generating empty files
6.6 years ago by lechu ▴ 20
0
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0
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3.2k
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Comment: C: Help with Fastqc error
6.7 years ago by lechu ▴ 20
0
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1
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3.2k
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Comment: C: Help with Fastqc error
6.7 years ago by lechu ▴ 20
0
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1
reply
3.2k
views
Comment: A: Fastqc error. please help me.
6.7 years ago by lechu ▴ 20
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