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10
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Answer: Answer: Checking Version of Bioconductor
updated 2.3 years ago by 45k • written 7.1 years ago by ▴ 610
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Answer: A: bedtools coverage gives error received illegal bin number, but that number isn't
updated 6.2 years ago by 45k • written 7.6 years ago by ▴ 610
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2.8k
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Comment: C: Noncoding Rnas Having Cds In Ensembl?
6.7 years ago by apa@stowers ▴ 610
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3.8k
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Comment: C: tophat aligns to wrong strand
8.2 years ago by apa@stowers ▴ 610
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3.8k
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Comment: C: tophat aligns to wrong strand
8.2 years ago by apa@stowers ▴ 610
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1.8k
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Comment: C: What is the difference between structural RNA-derived reads and non-structural R
8.2 years ago by apa@stowers ▴ 610
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5.7k
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Comment: C: RPKM and FPKM directly comparable?
8.2 years ago by apa@stowers ▴ 610
2
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5.6k
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Comment: C: HT-seq Counts Very High Number of No Feature
8.2 years ago by apa@stowers ▴ 610
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1
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3.8k
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Answer: A: tophat aligns to wrong strand
8.2 years ago by apa@stowers ▴ 610
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69k
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Answer: C: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
8.2 years ago by apa@stowers ▴ 610
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3.3k
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Answer: A: Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transc
8.2 years ago by apa@stowers ▴ 610
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3.0k
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Comment: C: RNA contamination in WGS data
8.2 years ago by apa@stowers ▴ 610
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1
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23k
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Comment: C: How to convert bedgraph to bigwig?
8.2 years ago by apa@stowers ▴ 610
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1
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3.0k
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Comment: C: RNA contamination in WGS data
8.2 years ago by apa@stowers ▴ 610
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4.2k
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Answer: A: RNAseq read depth
8.2 years ago by apa@stowers ▴ 610
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14k
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Answer: A: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.2 years ago by apa@stowers ▴ 610
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2.3k
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Comment: C: Tophat2 and Bowtie2 : determining appropriate values for mate-inner-dist and mat
8.2 years ago by apa@stowers ▴ 610
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5.6k
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Comment: C: HT-seq Counts Very High Number of No Feature
8.2 years ago by apa@stowers ▴ 610
2
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1
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5.6k
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Comment: C: HT-seq Counts Very High Number of No Feature
8.2 years ago by apa@stowers ▴ 610
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1.5k
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Answer: A: How To Fetch Chromosome Coordinates From Sequence
8.2 years ago by apa@stowers ▴ 610
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3.0k
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Answer: A: genomeCoverageBed : for fixed size bins
8.2 years ago by apa@stowers ▴ 610
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2.7k
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Answer: A: miRNA binding detection from RNA-seq reads
8.2 years ago by apa@stowers ▴ 610
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1
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7.0k
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Comment: C: Alignment stats summary by STAR aligner, please help!
8.2 years ago by apa@stowers ▴ 610
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1
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4.1k
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Answer: A: miRNA blast to RNA database?
8.2 years ago by apa@stowers ▴ 610
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1.2k
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Comment: C: Tool for finding Self regulatory genes
8.2 years ago by apa@stowers ▴ 610
1
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1
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7.0k
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Answer: A: Alignment stats summary by STAR aligner, please help!
8.2 years ago by apa@stowers ▴ 610
5
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1
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23k
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Answer: A: Checking fastq is valid
8.2 years ago by apa@stowers ▴ 610
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1
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2.0k
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Answer: A: TF motif half-site enrichment
8.2 years ago by apa@stowers ▴ 610
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1
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1.9k
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Comment: C: Screen reads based on certain sequences. Write code myself or designated tools.
8.2 years ago by apa@stowers ▴ 610
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1
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9.7k
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Comment: C: Irreproducible Discovery Rate
8.2 years ago by apa@stowers ▴ 610
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1.9k
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Answer: A: Screen reads based on certain sequences. Write code myself or designated tools.
8.2 years ago by apa@stowers ▴ 610
1
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0
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2.1k
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Answer: A: Getting plant full length cDNA sequences from NCBI
8.2 years ago by apa@stowers ▴ 610
6
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1
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14k
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Answer: A: Difference between the Fasta files from UCSC and Gencode/Ensembl
8.2 years ago by apa@stowers ▴ 610
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3.3k
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Comment: C: lift coordinates mapping to_alt chromosomes in hg38
8.2 years ago by apa@stowers ▴ 610
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4.8k
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Answer: A: mutations' effect on secondary structure
8.2 years ago by apa@stowers ▴ 610
1
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3.8k
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Answer: A: mapping read is low for miRNA data after trimming
8.2 years ago by apa@stowers ▴ 610
1
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1.3k
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Comment: C: Header line of gff file containing Structural Variants
8.2 years ago by apa@stowers ▴ 610
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1
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3.8k
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Comment: C: mapping read is low for miRNA data after trimming
8.2 years ago by apa@stowers ▴ 610
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0
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1.8k
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Comment: C: How to calculate the number of proteins present in each chromosomes?
8.2 years ago by apa@stowers ▴ 610
1
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6.9k
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Answer: A: Mapping miRNA to the Human Genome with Bowtie2
8.2 years ago by apa@stowers ▴ 610
1
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0
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11k
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Answer: A: Chip-Seq merging peak files
8.2 years ago by apa@stowers ▴ 610
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0
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3.8k
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Comment: C: De novo assembled transcript mapping to genome scaffold
8.2 years ago by apa@stowers ▴ 610
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2.9k
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Comment: C: How should i start my career in bioinformatics???
8.2 years ago by apa@stowers ▴ 610
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1.3k
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Comment: C: Is there any location encoding available for the unwrapped DNA?
8.2 years ago by apa@stowers ▴ 610
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3.2k
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Answer: A: Metrics to evaluate tree congruence
8.2 years ago by apa@stowers ▴ 610
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1.9k
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Comment: A: Relative Positions +/- strand
8.2 years ago by apa@stowers ▴ 610
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1
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2.0k
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Answer: A: TF motif half-site enrichment
8.2 years ago by apa@stowers ▴ 610
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0
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3.9k
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Comment: C: How to parse GFF3 file to get introns number and length from CDS coordinates?
8.2 years ago by apa@stowers ▴ 610
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1
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1.8k
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Answer: A: How to calculate the number of proteins present in each chromosomes?
8.2 years ago by apa@stowers ▴ 610
1
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0
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5.7k
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Answer: A: Creating design matrix in LIMMA
8.2 years ago by apa@stowers ▴ 610
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