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9
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Answer: Answer: Checking Version of Bioconductor
updated 3 months ago by 38k • written 5.1 years ago by ▴ 580
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14k
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Answer: A: bedtools coverage gives error received illegal bin number, but that number isn't
updated 4.2 years ago by 38k • written 5.6 years ago by ▴ 580
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2.2k
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Comment: C: Noncoding Rnas Having Cds In Ensembl?
4.7 years ago by apa@stowers ▴ 580
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1
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2.6k
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Comment: C: tophat aligns to wrong strand
6.2 years ago by apa@stowers ▴ 580
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1
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2.6k
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Comment: C: tophat aligns to wrong strand
6.2 years ago by apa@stowers ▴ 580
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1.2k
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Comment: C: What is the difference between structural RNA-derived reads and non-structural R
6.2 years ago by apa@stowers ▴ 580
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4.7k
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Comment: C: RPKM and FPKM directly comparable?
6.2 years ago by apa@stowers ▴ 580
2
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1
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4.0k
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Comment: C: HT-seq Counts Very High Number of No Feature
6.2 years ago by apa@stowers ▴ 580
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1
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2.6k
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Answer: A: tophat aligns to wrong strand
6.2 years ago by apa@stowers ▴ 580
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0
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52k
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Answer: C: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
6.2 years ago by apa@stowers ▴ 580
2
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2.9k
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Answer: A: Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transc
6.2 years ago by apa@stowers ▴ 580
1
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2.3k
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Comment: C: RNA contamination in WGS data
6.2 years ago by apa@stowers ▴ 580
1
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1
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19k
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Comment: C: How to convert bedgraph to bigwig?
6.2 years ago by apa@stowers ▴ 580
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1
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2.3k
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Comment: C: RNA contamination in WGS data
6.2 years ago by apa@stowers ▴ 580
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3.1k
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Answer: A: RNAseq read depth
6.2 years ago by apa@stowers ▴ 580
1
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1
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12k
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Answer: A: Convert read counts to RPKM or TPM values: Numbers don't look right?
6.2 years ago by apa@stowers ▴ 580
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1.9k
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Comment: C: Tophat2 and Bowtie2 : determining appropriate values for mate-inner-dist and mat
6.2 years ago by apa@stowers ▴ 580
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4.0k
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Comment: C: HT-seq Counts Very High Number of No Feature
6.2 years ago by apa@stowers ▴ 580
2
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1
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4.0k
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Comment: C: HT-seq Counts Very High Number of No Feature
6.2 years ago by apa@stowers ▴ 580
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0
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1.2k
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Answer: A: How To Fetch Chromosome Coordinates From Sequence
6.2 years ago by apa@stowers ▴ 580
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2.4k
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Answer: A: genomeCoverageBed : for fixed size bins
6.2 years ago by apa@stowers ▴ 580
2
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2.1k
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Answer: A: miRNA binding detection from RNA-seq reads
6.2 years ago by apa@stowers ▴ 580
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1
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5.2k
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Comment: C: Alignment stats summary by STAR aligner, please help!
6.2 years ago by apa@stowers ▴ 580
1
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1
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3.1k
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Answer: A: miRNA blast to RNA database?
6.2 years ago by apa@stowers ▴ 580
0
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0
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982
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Comment: C: Tool for finding Self regulatory genes
6.2 years ago by apa@stowers ▴ 580
1
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1
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5.2k
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Answer: A: Alignment stats summary by STAR aligner, please help!
6.2 years ago by apa@stowers ▴ 580
4
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1
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15k
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Answer: A: Checking fastq is valid
6.2 years ago by apa@stowers ▴ 580
0
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1
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1.5k
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Answer: A: TF motif half-site enrichment
6.2 years ago by apa@stowers ▴ 580
0
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1
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1.2k
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Comment: C: Screen reads based on certain sequences. Write code myself or designated tools.
6.2 years ago by apa@stowers ▴ 580
0
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1
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8.6k
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Comment: C: Irreproducible Discovery Rate
6.2 years ago by apa@stowers ▴ 580
1
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1.2k
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Answer: A: Screen reads based on certain sequences. Write code myself or designated tools.
6.2 years ago by apa@stowers ▴ 580
1
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0
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1.6k
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Answer: A: Getting plant full length cDNA sequences from NCBI
6.2 years ago by apa@stowers ▴ 580
5
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1
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11k
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Answer: A: Difference between the Fasta files from UCSC and Gencode/Ensembl
6.2 years ago by apa@stowers ▴ 580
0
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0
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2.1k
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Comment: C: lift coordinates mapping to_alt chromosomes in hg38
6.2 years ago by apa@stowers ▴ 580
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0
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4.1k
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Answer: A: mutations' effect on secondary structure
6.2 years ago by apa@stowers ▴ 580
1
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0
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2.8k
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Answer: A: mapping read is low for miRNA data after trimming
6.2 years ago by apa@stowers ▴ 580
1
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0
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1.0k
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Comment: C: Header line of gff file containing Structural Variants
6.2 years ago by apa@stowers ▴ 580
0
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1
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2.8k
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Comment: C: mapping read is low for miRNA data after trimming
6.2 years ago by apa@stowers ▴ 580
0
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0
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1.4k
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Comment: C: How to calculate the number of proteins present in each chromosomes?
6.2 years ago by apa@stowers ▴ 580
1
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0
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5.4k
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Answer: A: Mapping miRNA to the Human Genome with Bowtie2
6.2 years ago by apa@stowers ▴ 580
1
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0
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7.8k
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Answer: A: Chip-Seq merging peak files
6.2 years ago by apa@stowers ▴ 580
0
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0
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2.9k
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Comment: C: De novo assembled transcript mapping to genome scaffold
6.2 years ago by apa@stowers ▴ 580
0
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0
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2.3k
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Comment: C: How should i start my career in bioinformatics???
6.2 years ago by apa@stowers ▴ 580
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0
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1.0k
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Comment: C: Is there any location encoding available for the unwrapped DNA?
6.2 years ago by apa@stowers ▴ 580
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0
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2.1k
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Answer: A: Metrics to evaluate tree congruence
6.2 years ago by apa@stowers ▴ 580
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0
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1.5k
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Comment: A: Relative Positions +/- strand
6.2 years ago by apa@stowers ▴ 580
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1
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1.5k
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Answer: A: TF motif half-site enrichment
6.2 years ago by apa@stowers ▴ 580
0
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0
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3.2k
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Comment: C: How to parse GFF3 file to get introns number and length from CDS coordinates?
6.2 years ago by apa@stowers ▴ 580
0
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1
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1.4k
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Answer: A: How to calculate the number of proteins present in each chromosomes?
6.2 years ago by apa@stowers ▴ 580
1
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0
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5.3k
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Answer: A: Creating design matrix in LIMMA
6.2 years ago by apa@stowers ▴ 580
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