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Comment: Comment: Identifying common DEGs among multiple datasets
2.1 years ago by bk11 ★ 3.1k
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2.1k
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Answer: Answer: How to display all top markers in the heatmap by DoHeatmap (Seurat) when there a
updated 2.1 years ago by 45k • written 2.1 years ago by ★ 3.1k
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Comment: Comment: Inflated GWAS test statistic after merging multiple batches of genotype dataset
2.1 years ago by bk11 ★ 3.1k
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3.3k
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Answer: Answer: Inflated GWAS test statistic after merging multiple batches of genotype dataset
2.1 years ago by bk11 ★ 3.1k
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1.6k
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Comment: Comment: Generate a fraction of immune cell between two condition from single cell RNAseq
2.1 years ago by bk11 ★ 3.1k
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Answer: Answer: differential gene expression analysis comparing different conditions using scRNA
2.1 years ago by bk11 ★ 3.1k
3
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925
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Answer: Answer: Automatic Cluster Annotation to the subsets of immune cells
2.1 years ago by bk11 ★ 3.1k
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905
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Comment: Comment: Multiple testing adjustment for stepwise model selection
2.1 years ago by bk11 ★ 3.1k
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1.5k
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Answer: Answer: Data Import Issue detectRUNS R
2.1 years ago by bk11 ★ 3.1k
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1.5k
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Comment: Comment: Data Import Issue detectRUNS R
2.1 years ago by bk11 ★ 3.1k
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1.7k
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Comment: Comment: Filtering mitochondrial genes in DESEq results
2.1 years ago by bk11 ★ 3.1k
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1.8k
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Answer: Answer: GTF annotation file for Hg38 Dec 2013 (First Release)
2.1 years ago by bk11 ★ 3.1k
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838
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Comment: Comment: Deseq2
2.2 years ago by bk11 ★ 3.1k
2
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999
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Answer: Answer: How to split grouping information in a single expression matrix?
2.2 years ago by bk11 ★ 3.1k
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2.3k
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Comment: Comment: Running Enrichr in python using a background gene list
2.2 years ago by bk11 ★ 3.1k
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2.3k
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Answer: Answer: Running Enrichr in python using a background gene list
2.2 years ago by bk11 ★ 3.1k
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Answer: Answer: Running python script in slurm using conda environment
2.2 years ago by bk11 ★ 3.1k
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1.0k
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Answer: Answer: how to remove description from header?
2.2 years ago by bk11 ★ 3.1k
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759
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Comment: Comment: TCGAbiolinks MSI data
2.2 years ago by bk11 ★ 3.1k
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1.9k
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Answer: Answer: summarize consecutive columns over a data frame
updated 2.1 years ago by 45k • written 2.2 years ago by ★ 3.1k
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1.0k
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Answer: Answer: Choosing background for ORA using scrnaseq
2.2 years ago by bk11 ★ 3.1k
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2.0k
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Comment: Comment: Michigan Imputation Server low reference overlap
2.2 years ago by bk11 ★ 3.1k
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2.0k
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Answer: Answer: Michigan Imputation Server low reference overlap
2.2 years ago by bk11 ★ 3.1k
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2.2k
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Comment: Comment: Is there a way to get a list of all homogygous sites for each sample with plink
2.2 years ago by bk11 ★ 3.1k
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1
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2.2k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
2.2 years ago by bk11 ★ 3.1k
2
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1.4k
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Answer: Answer: Consensus Cluster takes normalized gene counts or raw gene counts?
2.2 years ago by bk11 ★ 3.1k
0
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1
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2.4k
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Comment: Comment: How to get top 10 genes expressed in a cluster ( for cell type identification)?
2.2 years ago by bk11 ★ 3.1k
3
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2.4k
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Answer: Answer: Could not view/find meta.data and Error merging three seurat object
2.2 years ago by bk11 ★ 3.1k
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0
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4.1k
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Answer: Answer: How to limit fasta header to 40 characters?
2.2 years ago by bk11 ★ 3.1k
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4.1k
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Comment: Comment: How to limit fasta header to 40 characters?
2.2 years ago by bk11 ★ 3.1k
1
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2
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4.1k
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Comment: Comment: Help with error scanpy
2.2 years ago by bk11 ★ 3.1k
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0
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1.4k
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Answer: Answer: GO annotation in R using library(org.Hs.eg.db)
2.2 years ago by bk11 ★ 3.1k
2
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0
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3.4k
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Comment: Comment: Cluster annotation in single cell
2.2 years ago by bk11 ★ 3.1k
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1.0k
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Comment: Comment: Any online course for learning how to use PLINK?
2.2 years ago by bk11 ★ 3.1k
3
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1
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4.1k
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Comment: Comment: How to limit fasta header to 40 characters?
2.2 years ago by bk11 ★ 3.1k
2
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1
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4.1k
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Answer: Answer: How to limit fasta header to 40 characters?
2.2 years ago by bk11 ★ 3.1k
2
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0
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1.3k
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Answer: Answer: About scdbfinder
2.2 years ago by bk11 ★ 3.1k
4
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1
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1.5k
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Answer: Answer: How to calculate GC content of reads that mapped to a specific gene?
2.2 years ago by bk11 ★ 3.1k
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1.5k
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Comment: Comment: The effect of SNPs at the same location
2.2 years ago by bk11 ★ 3.1k
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1
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1.5k
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Comment: Comment: The effect of SNPs at the same location
2.2 years ago by bk11 ★ 3.1k
1
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1
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2.3k
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Answer: Answer: R based query about making pairwise matrix
2.2 years ago by bk11 ★ 3.1k
0
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0
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1.9k
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Comment: Comment: Why Beagle v5.4 fails during phasing large genotypic data set?
2.2 years ago by bk11 ★ 3.1k
1
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1
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3.8k
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Comment: Comment: Help with Error: Required version of NumPy not available: installation of Numpy
2.2 years ago by bk11 ★ 3.1k
1
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1
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3.8k
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Comment: Comment: Help with Error: Required version of NumPy not available: installation of Numpy
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 3.1k
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1
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3.8k
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Comment: Comment: Help with Error: Required version of NumPy not available: installation of Numpy
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 3.1k
2
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2
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3.8k
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Answer: Answer: Help with Error: Required version of NumPy not available: installation of Numpy
2.2 years ago by bk11 ★ 3.1k
1
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0
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5.7k
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Comment: Comment: Reproduce the article "The complete sequence of a human genome."
2.2 years ago by bk11 ★ 3.1k
1
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0
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5.7k
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Comment: Comment: Reproduce the article "The complete sequence of a human genome."
2.2 years ago by bk11 ★ 3.1k
0
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1
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4.6k
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Answer: Answer: CellRanger output more cells than specified using --force-cells? Why?
2.2 years ago by bk11 ★ 3.1k
1
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1
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1.5k
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Comment: Comment: How to understand if a GWAS sample comes from Chromosome X or Y
2.2 years ago by bk11 ★ 3.1k
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