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Comment: Comment: scRNA-seq quality control
6 months ago by bk11 ★ 2.4k
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903
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Comment: Comment: duplicates issues when trying to convert long to wide in R
6 months ago by bk11 ★ 2.4k
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0
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517
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Answer: Answer: Perform PCA
6 months ago by bk11 ★ 2.4k
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903
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Answer: Answer: duplicates issues when trying to convert long to wide in R
6 months ago by bk11 ★ 2.4k
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1
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495
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Comment: Comment: A question about the missing or not observed alleles in PLINK datasets
6 months ago by bk11 ★ 2.4k
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0
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410
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Answer: Answer: Should I apply doublet detection for each pool seperately?
6 months ago by bk11 ★ 2.4k
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0
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671
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Comment: Comment: convert matrix files from 10X (single cell) to h5 file
6 months ago by bk11 ★ 2.4k
1
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0
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457
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Answer: Answer: LD D-prime (D') calculation
6 months ago by bk11 ★ 2.4k
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0
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502
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Answer: Answer: Plink Error
6 months ago by bk11 ★ 2.4k
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0
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490
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Answer: Answer: XLOC gene id
6 months ago by bk11 ★ 2.4k
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0
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647
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Answer: Answer: PLINK Error: No valid entries in --score file
6 months ago by bk11 ★ 2.4k
1
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0
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865
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Comment: Comment: Read multiple vcf files into R
6 months ago by bk11 ★ 2.4k
1
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0
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592
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Answer: Answer: how to merge multiple files based on column header
updated 6 months ago by 43k • written 6 months ago by ★ 2.4k
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484
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Comment: Comment: Normalized data values very different from unnormalized counts in Seurat
6 months ago by bk11 ★ 2.4k
1
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1
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949
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Comment: Comment: A question about genotyping rate
6 months ago by bk11 ★ 2.4k
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1
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949
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Comment: Comment: A question about genotyping rate
6 months ago by bk11 ★ 2.4k
0
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1
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949
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Comment: Comment: A question about genotyping rate
6 months ago by bk11 ★ 2.4k
3
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1
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786
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by bk11 ★ 2.4k
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1
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843
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Answer: Answer: Doheatmap in seurat
6 months ago by bk11 ★ 2.4k
3
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393
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Answer: Answer: How to retrieve the number of reads mapped for each chromosome in the BAM file o
6 months ago by bk11 ★ 2.4k
0
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1
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748
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Comment: Comment: Bowtie2/Fastq-dump problem
6 months ago by bk11 ★ 2.4k
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0
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609
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Comment: Comment: will using samtools merge to multiple bam files also remove the redundancy ?
6 months ago by bk11 ★ 2.4k
1
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1
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732
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Answer: Answer: FPKM values for DE analysis - Why?
6 months ago by bk11 ★ 2.4k
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0
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727
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Comment: Comment: error in Fastq
6 months ago by bk11 ★ 2.4k
0
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1
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914
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
6 months ago by bk11 ★ 2.4k
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0
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484
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Comment: Comment: How do I add sample annotations to this data?
6 months ago by bk11 ★ 2.4k
1
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1
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540
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Answer: Answer: How do I remove duplicate SNPs in PLINK from more than 1 data set?
6 months ago by bk11 ★ 2.4k
0
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1
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611
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Comment: Comment: No valid chromosomes found! on Michigan Imputation Server
6 months ago by bk11 ★ 2.4k
4
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0
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742
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Answer: Answer: Annoate complex heatmap columns
6 months ago by bk11 ★ 2.4k
0
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0
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555
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Answer: Answer: What do HAP A1 and HAP A2 mean in plink --freqx output?
6 months ago by bk11 ★ 2.4k
2
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1
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586
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Comment: Comment: Can I still remove ambient RNA if I do not have raw barcode-gene matrix?
6 months ago by bk11 ★ 2.4k
0
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0
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994
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Comment: Comment: Cannot add new cells with NormalizeData from seurat
6 months ago by bk11 ★ 2.4k
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1
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1.6k
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Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
6 months ago by bk11 ★ 2.4k
0
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1
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1.6k
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Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
6 months ago by bk11 ★ 2.4k
0
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1
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1.6k
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Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
6 months ago by bk11 ★ 2.4k
0
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1
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1.6k
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Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
6 months ago by bk11 ★ 2.4k
0
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2
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1.6k
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Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
6 months ago by bk11 ★ 2.4k
3
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0
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587
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Comment: Comment: PLINK .ped file issue
6 months ago by bk11 ★ 2.4k
2
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1
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554
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Answer: Answer: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
6 months ago by bk11 ★ 2.4k
1
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1
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1.5k
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Answer: Answer: Seurat changing order cluster shown in the violin plot
7 months ago by bk11 ★ 2.4k
0
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0
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484
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Answer: Answer: Changing LFC font size on Complex Heatmap
7 months ago by bk11 ★ 2.4k
0
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0
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400
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Comment: Comment: DESeq2 : standardising variation between treatments
7 months ago by bk11 ★ 2.4k
1
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0
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684
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Answer: Answer: pheatmap
7 months ago by bk11 ★ 2.4k
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0
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1.0k
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Comment: Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
7 months ago by bk11 ★ 2.4k
1
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1
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1.0k
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Comment: Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
7 months ago by bk11 ★ 2.4k
3
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1
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507
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Answer: Answer: Feature plot not applicable for RunTSNE object in seurat?
7 months ago by bk11 ★ 2.4k
0
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0
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663
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Comment: Comment: QC of genetic data
7 months ago by bk11 ★ 2.4k
3
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1
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819
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Answer: Answer: Exporting DEGs obtained from DESeq2
7 months ago by bk11 ★ 2.4k
0
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1
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819
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Comment: Comment: Exporting DEGs obtained from DESeq2
7 months ago by bk11 ★ 2.4k
0
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0
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599
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Answer: Answer: GOSt Plot
7 months ago by bk11 ★ 2.4k
400 results • Page 3 of 8
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