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3
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216
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Answer: Answer: Seurat merge and batch correction
updated 2 days ago by 43k • written 2 days ago by ★ 2.4k
2
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1
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245
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Answer: Answer: How to filter columns in a raw sparse matrix in R
9 days ago by bk11 ★ 2.4k
1
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1
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416
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Answer: Answer: Rename multiple fastq.gz files
10 days ago by bk11 ★ 2.4k
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0
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191
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Answer: Answer: convert h5ad to rds
15 days ago by bk11 ★ 2.4k
0
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0
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205
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Answer: Answer: RNA-seq with normalized cpm count
4 weeks ago by bk11 ★ 2.4k
0
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1
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457
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
5 weeks ago by bk11 ★ 2.4k
1
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1
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281
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Answer: Answer: Seurat: CreateSeuratObject error, please help
6 weeks ago by bk11 ★ 2.4k
3
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0
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511
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Answer: Answer: SHAPEIT5 phasing
7 weeks ago by bk11 ★ 2.4k
0
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1
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343
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Answer: Answer: Converting SNP data table into .traw format or qtl (R) format
10 weeks ago by bk11 ★ 2.4k
3
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1
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770
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Answer: Answer: ensembl - selecting SNPs of specific genes
10 weeks ago by bk11 ★ 2.4k
1
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0
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244
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Answer: Answer: 1000 genome project specific genes selection
10 weeks ago by bk11 ★ 2.4k
0
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0
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476
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Answer: Answer: reading scRNAseq .h5 file into anndata format from GEO - No clear matrix?
10 weeks ago by bk11 ★ 2.4k
0
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0
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273
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Answer: Answer: GWAS on unbalanced case-control UKB dataset using PLINK2
10 weeks ago by bk11 ★ 2.4k
1
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1
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419
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Answer: Answer: Merge seurat list
11 weeks ago by bk11 ★ 2.4k
2
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1
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500
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Answer: Answer: Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
updated 10 weeks ago by 43k • written 11 weeks ago by ★ 2.4k
1
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1
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1.2k
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Answer: Answer: Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
11 weeks ago by bk11 ★ 2.4k
1
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0
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305
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Answer: Answer: Extract information of mapped reads bam files
12 weeks ago by bk11 ★ 2.4k
0
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0
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254
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Answer: Answer: Obtain rsID GWAS variants (9M)
12 weeks ago by bk11 ★ 2.4k
2
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0
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275
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Answer: Answer: Data scaling in single-cell RNAseq - sample-wise or on the full set?
12 weeks ago by bk11 ★ 2.4k
1
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0
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309
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Answer: Answer: filter 1000 genome vcf file to keep common snps
3 months ago by bk11 ★ 2.4k
0
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0
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628
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
3 months ago by bk11 ★ 2.4k
1
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1
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985
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Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
2
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0
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317
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Answer: Answer: OSCA -open .h5 file
4 months ago by bk11 ★ 2.4k
0
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1
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702
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Answer: Answer: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
0
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1
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425
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Answer: Answer: tool to find enhancer associated to gene list
4 months ago by bk11 ★ 2.4k
1
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1
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584
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Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
4 months ago by bk11 ★ 2.4k
1
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0
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597
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Answer: Answer: Convert bed file from hg19 to GRCH38
4 months ago by bk11 ★ 2.4k
2
votes
2
replies
567
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Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
5 months ago by bk11 ★ 2.4k
2
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0
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1.5k
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Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
5 months ago by bk11 ★ 2.4k
0
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0
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502
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Answer: Answer: Perform PCA
5 months ago by bk11 ★ 2.4k
1
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1
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876
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Answer: Answer: duplicates issues when trying to convert long to wide in R
5 months ago by bk11 ★ 2.4k
0
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0
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377
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Answer: Answer: Should I apply doublet detection for each pool seperately?
5 months ago by bk11 ★ 2.4k
1
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0
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441
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Answer: Answer: LD D-prime (D') calculation
5 months ago by bk11 ★ 2.4k
0
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0
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474
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Answer: Answer: Plink Error
5 months ago by bk11 ★ 2.4k
0
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0
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468
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Answer: Answer: XLOC gene id
5 months ago by bk11 ★ 2.4k
0
votes
0
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609
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Answer: Answer: PLINK Error: No valid entries in --score file
5 months ago by bk11 ★ 2.4k
1
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0
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561
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Answer: Answer: how to merge multiple files based on column header
updated 5 months ago by 43k • written 5 months ago by ★ 2.4k
3
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1
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744
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by bk11 ★ 2.4k
0
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1
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795
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Answer: Answer: Doheatmap in seurat
6 months ago by bk11 ★ 2.4k
3
votes
0
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375
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Answer: Answer: How to retrieve the number of reads mapped for each chromosome in the BAM file o
6 months ago by bk11 ★ 2.4k
1
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1
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681
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Answer: Answer: FPKM values for DE analysis - Why?
6 months ago by bk11 ★ 2.4k
0
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1
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862
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
6 months ago by bk11 ★ 2.4k
1
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1
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517
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Answer: Answer: How do I remove duplicate SNPs in PLINK from more than 1 data set?
6 months ago by bk11 ★ 2.4k
4
votes
0
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705
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Answer: Answer: Annoate complex heatmap columns
6 months ago by bk11 ★ 2.4k
0
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0
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540
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Answer: Answer: What do HAP A1 and HAP A2 mean in plink --freqx output?
6 months ago by bk11 ★ 2.4k
2
votes
1
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527
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Answer: Answer: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
6 months ago by bk11 ★ 2.4k
1
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1
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1.3k
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Answer: Answer: Seurat changing order cluster shown in the violin plot
6 months ago by bk11 ★ 2.4k
0
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0
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454
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Answer: Answer: Changing LFC font size on Complex Heatmap
6 months ago by bk11 ★ 2.4k
1
vote
0
replies
664
views
Answer: Answer: pheatmap
6 months ago by bk11 ★ 2.4k
3
votes
1
reply
485
views
Answer: Answer: Feature plot not applicable for RunTSNE object in seurat?
6 months ago by bk11 ★ 2.4k
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