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Answer: Answer: Evolution of Biostars
2.2 years ago by aldhairmedico ▴ 70
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5.9k
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Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
2.2 years ago by aldhairmedico ▴ 70
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Answer: Answer: Error: htsjdk.tribble.TribbleExpection: The provided VCF file is malformed at ap
2.2 years ago by aldhairmedico ▴ 70
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Answer: Answer: htsjdk.tribble.TribbleException: The provided VCF file is malformed
2.2 years ago by aldhairmedico ▴ 70
3
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5
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5.7k
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Mutect2 error: Badly formed genome unclippedLoc
Mutect2 GenomicsDB WES GATK
updated 4.2 years ago by • 0 • written 4.4 years ago by ▴ 70
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Comment: Comment: processing in strelka2 with multiples bam file in directory
3.9 years ago by aldhairmedico ▴ 70
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1.7k
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Installing Bio::DB::Big::File on Ubuntu (Building and testing...)
Library Module Perl Ubuntu
updated 3.9 years ago by ★ 1.9k • written 3.9 years ago by ▴ 70
2
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1.1k
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How to handle VCFs from the same sample but using different aligners and variant callers?
calling exome variant aligner VCF
3.9 years ago by aldhairmedico ▴ 70
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1.7k
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Answer: Answer: Somatic Variant Calling
3.9 years ago by aldhairmedico ▴ 70
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5.9k
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Answer: Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
4.1 years ago by aldhairmedico ▴ 70
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4.6k
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Comment: Comment: Bowtie2 hg19 reference for gatk MuTect
4.2 years ago by aldhairmedico ▴ 70
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3.8k
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Answer: Answer: GATK CalculateContamination - zeros in output
4.2 years ago by aldhairmedico ▴ 70
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5.7k
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Comment: Comment: Badly formed genome unclippedLoc: Contig chr1 given as location, but this contig
4.2 years ago by aldhairmedico ▴ 70
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4.6k
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Comment: Comment: Bowtie2 hg19 reference for gatk MuTect
4.2 years ago by aldhairmedico ▴ 70
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3.5k
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Answer: Answer: stats file in Mutect2 calling
4.3 years ago by aldhairmedico ▴ 70
1
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5.7k
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Answer: Answer: Mutect2 error: Badly formed genome unclippedLoc
updated 3.0 years ago by 45k • written 4.3 years ago by ▴ 70
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