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Best practices for counting genes with nanopore RNAseq data
rna-seq nanopore alignment
updated 6.0 years ago by ▴ 10 • written 6.8 years ago by ▴ 90
0
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0
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1.4k
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Comment: C: Use Salmon to annotate a Sam file
6.3 years ago by Florian Bernard ▴ 90
0
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2
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1.4k
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Use Salmon to annotate a Sam file
Salmon RNA-Seq alignment quantification
updated 6.3 years ago by 89k • written 6.3 years ago by ▴ 90
0
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1
reply
1.4k
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retrieve relative position of CDS start for every isoforme
rna isoforme
6.6 years ago by Florian Bernard ▴ 90
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0
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Comment: C: Best practices for counting genes with nanopore RNAseq data
6.6 years ago by Florian Bernard ▴ 90
0
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0
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1.7k
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Comment: C: How to identify long reads coming from ligated cDNAs before sequencing ?
6.7 years ago by Florian Bernard ▴ 90
0
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1
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1.7k
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Comment: C: How to identify long reads coming from ligated cDNAs before sequencing ?
6.7 years ago by Florian Bernard ▴ 90
0
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4
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1.7k
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How to identify long reads coming from ligated cDNAs before sequencing ?
minimap2 ONT nanopore alignment cDNA
6.7 years ago by Florian Bernard ▴ 90
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0
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5.5k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
6.7 years ago by Florian Bernard ▴ 90
0
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0
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5.5k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
6.7 years ago by Florian Bernard ▴ 90
0
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1
reply
5.5k
views
Comment: C: Best practices for counting genes with nanopore RNAseq data
6.7 years ago by Florian Bernard ▴ 90
0
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1
reply
5.5k
views
Comment: C: Best practices for counting genes with nanopore RNAseq data
6.8 years ago by Florian Bernard ▴ 90
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0
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1.9k
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Comment: C: How to find a specific sequence within noisy reads ?
7.0 years ago by Florian Bernard ▴ 90
1
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2
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1.9k
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How to find a specific sequence within noisy reads ?
nanopore RNA-Seq python sequence match
7.0 years ago by Florian Bernard ▴ 90
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0
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5.5k
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Comment: C: filtering reads that are uniquely mapped
7.2 years ago by Florian Bernard ▴ 90
1
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1
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5.5k
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Comment: C: filtering reads that are uniquely mapped
7.2 years ago by Florian Bernard ▴ 90
0
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0
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5.5k
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Comment: C: filtering reads that are uniquely mapped
7.2 years ago by Florian Bernard ▴ 90
0
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1
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5.5k
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Comment: C: filtering reads that are uniquely mapped
7.2 years ago by Florian Bernard ▴ 90
6
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9
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5.5k
views
filtering reads that are uniquely mapped
alignment RNA-Seq samtools python
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 90
5
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12
replies
1.9k
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Identifying covered genes from nanopore cDNA-seq reads
RNA-Seq gene alignment
updated 7.2 years ago by 48k • written 7.2 years ago by ▴ 90
0
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0
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1.9k
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Comment: C: extracting gene names for RNA-seq reads
7.2 years ago by Florian Bernard ▴ 90
0
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0
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1.9k
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Comment: C: extracting gene names for RNA-seq reads
7.2 years ago by Florian Bernard ▴ 90
1
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0
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1.9k
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Answer: A: extracting gene names for RNA-seq reads
7.2 years ago by Florian Bernard ▴ 90
0
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2
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1.9k
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Comment: C: extracting gene names for RNA-seq reads
7.2 years ago by Florian Bernard ▴ 90
1
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0
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1.9k
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Comment: C: extracting gene names for RNA-seq reads
7.2 years ago by Florian Bernard ▴ 90
0
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0
replies
1.9k
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Comment: C: extracting gene names for RNA-seq reads
7.2 years ago by Florian Bernard ▴ 90
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