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Answer: Answer: Cellranger for BGI scRNAseq sequencing data with "Low Fraction Reads in Cells"?
4.0 years ago by swbarnes2 15k
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Answer: Answer: Deseq2 model matrix error
4.0 years ago by swbarnes2 15k
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Answer: Answer: Retrieving and interpreting specific contrast results from an interaction experi
4.0 years ago by swbarnes2 15k
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Comment: Comment: When I change samples grouping for normalization by DESeq2 I get different resul
4.0 years ago by swbarnes2 15k
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Comment: Comment: filtering most variable genes
4.0 years ago by swbarnes2 15k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
4.0 years ago by swbarnes2 15k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
4.0 years ago by swbarnes2 15k
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Comment: Comment: how to extract normalized expression from DESeq2 object (dds)?
4.0 years ago by swbarnes2 15k
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5.8k
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Comment: Comment: Which covariates and factors to include in model matrix
4.0 years ago by swbarnes2 15k
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1.7k
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Answer: Answer: how to extract normalized expression from DESeq2 object (dds)?
4.0 years ago by swbarnes2 15k
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1.9k
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Answer: Answer: Noob question: how to combine counts and DESeq data into one CSV?
4.0 years ago by swbarnes2 15k
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Answer: Answer: using rsem sample.genome.STAR.genome.bam for calculating expression
4.0 years ago by swbarnes2 15k
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5.8k
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Answer: Answer: Which covariates and factors to include in model matrix
4.0 years ago by swbarnes2 15k
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Comment: Comment: When I convert the Ensembl IDs to gene symbols, why lots of genes are duplicated
4.0 years ago by swbarnes2 15k
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Comment: Comment: Cell ranger reads do not match Seurat reads
4.0 years ago by swbarnes2 15k
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Answer: Answer: DEG analysis without biological Replication
4.0 years ago by swbarnes2 15k
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2.4k
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Comment: Comment: Analyzing counts over 3 different timepoints and 2 conditions with DESeq2
4.0 years ago by swbarnes2 15k
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2.4k
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Answer: Answer: Analyzing counts over 3 different timepoints and 2 conditions with DESeq2
4.0 years ago by swbarnes2 15k
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2.4k
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Comment: Comment: Command line .sam file processing
4.1 years ago by swbarnes2 15k
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Comment: Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
4.1 years ago by swbarnes2 15k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
4.1 years ago by swbarnes2 15k
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Answer: Answer: Reads per UMI from 10X Chromium RNAseq runs
4.1 years ago by swbarnes2 15k
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Comment: Comment: Ncbi fastq-dump with multiple lanes and cellranger count
4.1 years ago by swbarnes2 15k
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Comment: Comment: Low mapping frequency on STAR
4.1 years ago by swbarnes2 15k
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Comment: Comment: Low mapping frequency on STAR
4.1 years ago by swbarnes2 15k
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Answer: Answer: Error in Galaxy using Deseq2 "Error in data.frame(..., check.names = FALSE) :"
4.1 years ago by swbarnes2 15k
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5.6k
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Comment: Comment: Low mapping frequency on STAR
4.1 years ago by swbarnes2 15k
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Answer: Answer: scRNA-seq: To merge technical sequencing replicates or not to merge?
4.1 years ago by swbarnes2 15k
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3.2k
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Comment: Comment: error while plot data with deSeq2
4.1 years ago by swbarnes2 15k
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3.2k
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Comment: Comment: error while plot data with deSeq2
4.1 years ago by swbarnes2 15k
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3.2k
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Comment: Comment: error while plot data with deSeq2
4.1 years ago by swbarnes2 15k
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1.1k
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Answer: Answer: RNA-seq: Sequencing data has two coverages
4.1 years ago by swbarnes2 15k
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1.0k
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Answer: Answer: Normalize Data in R and Heatmap
4.1 years ago by swbarnes2 15k
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1.3k
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Answer: Answer: DESeq2 R markdown plotting problem
4.1 years ago by swbarnes2 15k
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1.6k
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Answer: Answer: How should I align my single-end fastq file?
4.1 years ago by swbarnes2 15k
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4.6k
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Answer: Answer: featureCounts has low successfully assigned reads
4.1 years ago by swbarnes2 15k
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0
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986
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Answer: Answer: Sequence Duplication Levels
4.1 years ago by swbarnes2 15k
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2.2k
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Comment: Comment: I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
4.1 years ago by swbarnes2 15k
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3.6k
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Answer: Answer: Cell Ranger count pipeline: use files with same name as input
4.1 years ago by swbarnes2 15k
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2.0k
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Answer: Answer: FASTQ to VCF pipeline question
4.1 years ago by swbarnes2 15k
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5.8k
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Comment: Comment: Rsubread FeatureCounts return 0.0% assigned
4.1 years ago by swbarnes2 15k
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3.9k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
4.1 years ago by swbarnes2 15k
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1
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5.8k
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Comment: Comment: Rsubread FeatureCounts return 0.0% assigned
4.1 years ago by swbarnes2 15k
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1.8k
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Comment: Comment: obtaining unique identifier for a sample from fastq files
4.1 years ago by swbarnes2 15k
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3.9k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
4.1 years ago by swbarnes2 15k
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1
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2.8k
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Comment: Comment: How to find newline character in fastq file? Is it essential to remove them?
4.1 years ago by swbarnes2 15k
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1
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1.8k
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Comment: Comment: obtaining unique identifier for a sample from fastq files
4.1 years ago by swbarnes2 15k
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1
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3.9k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
4.1 years ago by swbarnes2 15k
0
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1
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2.8k
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Comment: Comment: How to find newline character in fastq file? Is it essential to remove them?
4.1 years ago by swbarnes2 15k
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1
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3.9k
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Comment: Comment: Is it possible for a single DNA nucleotide to match its cDNA complement, and not
4.1 years ago by swbarnes2 15k
2,124 results • Page 12 of 43
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