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Answer: A: Salmon or Kallisto without reference transcriptome - possible?
5.3 years ago by swbarnes2 15k
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Answer: A: Programming language to know when using bioinformatic tools such REPET
5.3 years ago by swbarnes2 15k
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Answer: A: Adding a UMI tag to the UMI sequences in FASTQ files
5.3 years ago by swbarnes2 15k
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Comment: C: Problem in calculating p values
5.3 years ago by swbarnes2 15k
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Comment: C: FindAllMarkers for all genes in Seurat
5.3 years ago by swbarnes2 15k
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Answer: A: Query related to RSEM
5.3 years ago by swbarnes2 15k
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Comment: C: How to Merge 2 Technical Replicates From the same cDNA library (but run on diffe
5.3 years ago by swbarnes2 15k
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Answer: A: Understanding the output from HTseq-count
5.3 years ago by swbarnes2 15k
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3.7k
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Answer: A: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
5.3 years ago by swbarnes2 15k
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Answer: A: How to Merge 2 Technical Replicates From the same cDNA library (but run on diffe
5.3 years ago by swbarnes2 15k
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2.5k
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Answer: A: How can I normalize RPKM data from TCGA (pan-cancer analisys)?
5.3 years ago by swbarnes2 15k
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6.3k
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Comment: C: Using DESeq2 for time-series analysis
5.3 years ago by swbarnes2 15k
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Comment: C: High rate of "Aligned concordantly >1 times:"
5.4 years ago by swbarnes2 15k
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Comment: C: High rate of "Aligned concordantly >1 times:"
5.4 years ago by swbarnes2 15k
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Comment: C: Read showing Insertion of 41 bases when aligned with BWA
5.4 years ago by swbarnes2 15k
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1.2k
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Answer: A: Read showing Insertion of 41 bases when aligned with BWA
5.4 years ago by swbarnes2 15k
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Graphing timecourse data from DESeq2
DESeq
5.4 years ago by swbarnes2 15k
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Answer: A: Using DESeq2 for time-series analysis
5.4 years ago by swbarnes2 15k
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Comment: C: Specifying unequal replicates in deseq2 with htseq-count input
5.4 years ago by swbarnes2 15k
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Comment: C: FastQC & trimming - RNA seq data
5.4 years ago by swbarnes2 15k
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Comment: C: FastQC & trimming - RNA seq data
5.4 years ago by swbarnes2 15k
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Comment: C: count matrix of genes
5.4 years ago by swbarnes2 15k
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7.6k
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Comment: C: How to handle 4 fastq file for one paired-end sample?
5.4 years ago by swbarnes2 15k
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7.6k
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Comment: C: How to handle 4 fastq file for one paired-end sample?
5.4 years ago by swbarnes2 15k
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7.6k
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Comment: C: How to handle 4 fastq file for one paired-end sample?
5.4 years ago by swbarnes2 15k
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Answer: A: RSEM isoform.results outputs for edgeR
5.4 years ago by swbarnes2 15k
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3.2k
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Comment: C: Question: can not obtain DESeq2 results
5.4 years ago by swbarnes2 15k
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Comment: C: Error in DESeqDataSet(se, design = design, ignoreRank) : variables in design
5.4 years ago by swbarnes2 15k
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13k
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Answer: A: Error in DESeqDataSet(se, design = design, ignoreRank) : variables in design
5.4 years ago by swbarnes2 15k
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Answer: A: Differential Expression analysis between single cell RNa seq & bulk RNa seq data
5.4 years ago by swbarnes2 15k
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Answer: A: Cluster sub-set analysis using Seurat
5.4 years ago by swbarnes2 15k
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Answer: A: DESeq2: Getting results from multiple comparisons
5.4 years ago by swbarnes2 15k
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3.0k
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Answer: A: fastqc result: whether trim off low quality reads or not
5.4 years ago by swbarnes2 15k
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6.9k
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Comment: C: Why Salmon produces very different quantification results compared with featureC
5.4 years ago by swbarnes2 15k
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4.5k
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Answer: A: Extracting Genes that contribute to 1st PC
5.4 years ago by swbarnes2 15k
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1.4k
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Answer: A: DESeq2 Not Recognizing that my data set has been transformed when inputting. Hel
5.4 years ago by swbarnes2 15k
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2.4k
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Comment: C: Batch correction for one condition in DESeq2
5.4 years ago by swbarnes2 15k
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2.4k
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Comment: C: Batch correction for one condition in DESeq2
5.4 years ago by swbarnes2 15k
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2.4k
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Answer: A: Batch correction for one condition in DESeq2
5.4 years ago by swbarnes2 15k
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5.1k
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Comment: C: 10x Cell Ranger 'count' function error:
5.4 years ago by swbarnes2 15k
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5.1k
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Answer: A: 10x Cell Ranger 'count' function error:
5.4 years ago by swbarnes2 15k
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Comment: C: Merge fastq files
5.4 years ago by swbarnes2 15k
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2.3k
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Comment: C: 'No code' data manipulations tools for bioinformatics
5.4 years ago by swbarnes2 15k
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3.6k
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Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
5.4 years ago by swbarnes2 15k
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3.6k
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Answer: A: Filter out mouse reads from single cell RNA-seq of PDX tumor
5.4 years ago by swbarnes2 15k
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Comment: C: Is variation between samples reason for DESeq2 not calling DEGs significant?
5.4 years ago by swbarnes2 15k
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4.5k
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Comment: C: Extracting Genes that contribute to 1st PC
5.4 years ago by swbarnes2 15k
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2.3k
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Comment: C: Syntax for samtools flagstat on multiple .bam files outputting to .txt file
5.4 years ago by swbarnes2 15k
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4.1k
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Answer: A: Proper fastq pre-processing for extraction of count matrix
5.4 years ago by swbarnes2 15k
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1.8k
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Comment: C: How to extract genome from iontorent bam file?
5.4 years ago by swbarnes2 15k
2,124 results • Page 23 of 43
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