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Answer: Answer: Not retrieving Mitochondrial Genes in Single Cell analysis
16 months ago by swbarnes2 15k
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1.4k
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Answer: Answer: Two different RNA sequencing sets that have gene names set up differently - how
17 months ago by swbarnes2 15k
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Answer: Answer: Good Bioinformatics Jokes/Puns?
17 months ago by swbarnes2 15k
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834
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Answer: Answer: Batch effects in RNAseq
17 months ago by swbarnes2 15k
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Comment: Comment: Interaction analysis using DESeq while adjusting for covariates.
17 months ago by swbarnes2 15k
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1.5k
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Comment: Comment: RNA Seq Paired End High Duplication Rate
17 months ago by swbarnes2 15k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
17 months ago by swbarnes2 15k
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957
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Comment: Comment: Batch correction prior to running DESEQ2
17 months ago by swbarnes2 15k
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2
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1.5k
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Answer: Answer: RNA Seq Paired End High Duplication Rate
17 months ago by swbarnes2 15k
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3.1k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
18 months ago by swbarnes2 15k
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2
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3.1k
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Comment: Comment: RNA-seq differentially expressed genes (DEGs) with low fold change values
18 months ago by swbarnes2 15k
2
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1
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3.1k
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Answer: Answer: RNA-seq differentially expressed genes (DEGs) with low fold change values
18 months ago by swbarnes2 15k
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1
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2.1k
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Comment: Comment: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
18 months ago by swbarnes2 15k
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1.0k
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Answer: Answer: Help me with Heatmap
updated 18 months ago by 12k • written 18 months ago by 15k
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2.1k
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Answer: Answer: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
18 months ago by swbarnes2 15k
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1
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1.2k
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Answer: Answer: Design for complex RNA-Seq experiment using Deseq2
18 months ago by swbarnes2 15k
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1
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3.3k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
18 months ago by swbarnes2 15k
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3.3k
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Comment: Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
18 months ago by swbarnes2 15k
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1
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2.1k
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
18 months ago by swbarnes2 15k
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999
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Comment: Comment: Differentail gene expression results
18 months ago by swbarnes2 15k
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1.6k
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Comment: Comment: How to compute TPM normalized values for TCGA miRNA data?
18 months ago by swbarnes2 15k
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2.8k
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Comment: Comment: Understanding STAR output (Aligned.out.sam file)
18 months ago by swbarnes2 15k
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1.4k
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Answer: Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
18 months ago by swbarnes2 15k
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1.7k
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
18 months ago by swbarnes2 15k
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1
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2.2k
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Answer: Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
18 months ago by swbarnes2 15k
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1.7k
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
18 months ago by swbarnes2 15k
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0
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1.5k
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Answer: Answer: Sequence read length shorter than flow cell specification
19 months ago by swbarnes2 15k
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2.3k
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Comment: Comment: PCA plot (Suggestions Needed)
19 months ago by swbarnes2 15k
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1
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3.4k
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Comment: Comment: Adding CB tag to bam file
19 months ago by swbarnes2 15k
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2.3k
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Comment: Comment: PCA plot (Suggestions Needed)
19 months ago by swbarnes2 15k
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0
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2.3k
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Comment: Comment: PCA plot (Suggestions Needed)
19 months ago by swbarnes2 15k
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1
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2.0k
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Comment: Comment: To get p-values for the TPM
19 months ago by swbarnes2 15k
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1.8k
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Comment: Comment: Should I use unpaired reads from trimmomatic
19 months ago by swbarnes2 15k
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1.3k
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Answer: Answer: from row count to tpm
19 months ago by swbarnes2 15k
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1.8k
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Comment: Comment: Marking duplicates using UMIs
19 months ago by swbarnes2 15k
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1.5k
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Comment: Comment: Free/open source 23andme-like analysis
19 months ago by swbarnes2 15k
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0
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3.1k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
19 months ago by swbarnes2 15k
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3.4k
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Comment: Comment: Adding CB tag to bam file
19 months ago by swbarnes2 15k
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1.8k
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Comment: Comment: RNA seq differential expression analysis
19 months ago by swbarnes2 15k
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1
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3.4k
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Answer: Answer: Adding CB tag to bam file
19 months ago by swbarnes2 15k
2
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1
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2.6k
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
19 months ago by swbarnes2 15k
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0
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2.8k
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
19 months ago by swbarnes2 15k
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1
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2.8k
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
19 months ago by swbarnes2 15k
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0
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1.9k
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
19 months ago by swbarnes2 15k
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1.4k
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
20 months ago by swbarnes2 15k
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0
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881
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
20 months ago by swbarnes2 15k
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0
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944
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Answer: Answer: Detecting viruses in human rna seq data
20 months ago by swbarnes2 15k
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1
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1.1k
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
20 months ago by swbarnes2 15k
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2.7k
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
20 months ago by swbarnes2 15k
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0
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1.7k
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Comment: Comment: RNA_seq
20 months ago by swbarnes2 15k
2,124 results • Page 3 of 43
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