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Answer: Answer: DESeqDataSetFromMatrix error
9 months ago by swbarnes2 14k
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490
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Answer: Answer: Deseq2
9 months ago by swbarnes2 14k
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618
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Comment: Comment: htseq-count reports count values for deleted genes
9 months ago by swbarnes2 14k
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797
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Comment: Comment: How to Add Mutations to the sequence
9 months ago by swbarnes2 14k
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1.5k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
9 months ago by swbarnes2 14k
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1.3k
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Comment: Comment: STAR mapping - regarding output files content
10 months ago by swbarnes2 14k
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1.0k
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Comment: Comment: RSEM uses different gene lengths for each sample.
10 months ago by swbarnes2 14k
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847
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Answer: Answer: DESEQ2 analysis - PCA plot
10 months ago by swbarnes2 14k
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751
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Comment: Comment: Can I extract a complete sequence of gene from mapped reads bam file
10 months ago by swbarnes2 14k
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494
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Answer: Answer: Add gene counts of same samples run on two lanes (Novaseq)
10 months ago by swbarnes2 14k
2
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1
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690
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Answer: Answer: bcl2fastq not recognizing multiple barcode-mismatch argument
11 months ago by swbarnes2 14k
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1.2k
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
11 months ago by swbarnes2 14k
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1.2k
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Answer: Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
11 months ago by swbarnes2 14k
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716
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Answer: Answer: 10x genomics hashtag samples
11 months ago by swbarnes2 14k
1
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1
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656
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Answer: Answer: DESeq2, Time-course interpretation
11 months ago by swbarnes2 14k
4
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2.1k
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Answer: Answer: Multiple testing correction in RNA-Seq
11 months ago by swbarnes2 14k
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1.3k
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Comment: Comment: Transcript quantification
12 months ago by swbarnes2 14k
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0
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2.4k
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Answer: Answer: How to create a Seurat object from the `xxx_metadata.txt.gz ` and `xxx_counts.t
12 months ago by swbarnes2 14k
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2.0k
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Comment: Comment: Getting sequences from fastq file using Grep command
12 months ago by swbarnes2 14k
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1
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2.0k
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Answer: Answer: Getting sequences from fastq file using Grep command
12 months ago by swbarnes2 14k
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1.4k
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Comment: Comment: A question about the raw RNA-seq processing workflow
12 months ago by swbarnes2 14k
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1
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1.4k
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Comment: Comment: A question about the raw RNA-seq processing workflow
12 months ago by swbarnes2 14k
4
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2
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1.4k
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Answer: Answer: Italicise annotations with pheatmap
12 months ago by swbarnes2 14k
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2.0k
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Comment: Comment: Counting intronic reads in bulk RNA-seq
12 months ago by swbarnes2 14k
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1
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825
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Comment: Comment: Ambient RNA expression correction
12 months ago by swbarnes2 14k
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1.1k
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Answer: Answer: What is the best way to clean bulk RNA-seq data?
12 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: RNAseq Data and Pipeline
12 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: Is there anyway to cancel CPM normalization?
12 months ago by swbarnes2 14k
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1.6k
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Comment: Comment: Single cell chemistry
12 months ago by swbarnes2 14k
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0
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1.6k
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Comment: Comment: Single cell chemistry
12 months ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: Single cell chemistry
12 months ago by swbarnes2 14k
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1
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1.6k
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Comment: Comment: Single cell chemistry
12 months ago by swbarnes2 14k
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2
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2.0k
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Answer: Answer: Counting intronic reads in bulk RNA-seq
12 months ago by swbarnes2 14k
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1
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1.6k
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Answer: Answer: Single cell chemistry
12 months ago by swbarnes2 14k
0
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0
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682
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Answer: Answer: How to extract out gene specific reads from concatenated fastq file
12 months ago by swbarnes2 14k
1
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0
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704
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Comment: Comment: Using RNA-seq to detect pathogen sequences in host tissue
12 months ago by swbarnes2 14k
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0
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923
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Answer: Answer: rna seq design matrix
12 months ago by swbarnes2 14k
1
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0
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509
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Answer: Answer: Different read numbers for the same samples
12 months ago by swbarnes2 14k
1
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0
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1.4k
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Comment: Comment: On "wings" in volcano plots...
13 months ago by swbarnes2 14k
1
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1
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2.8k
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
13 months ago by swbarnes2 14k
1
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1
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2.8k
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Answer: Answer: Subsetting DESeq data set to compare treatments within one group (multi-group ex
13 months ago by swbarnes2 14k
0
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0
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889
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Comment: Comment: How to better distribute my replicates between two batches of bulk RNAseq?
13 months ago by swbarnes2 14k
2
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1
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889
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Answer: Answer: How to better distribute my replicates between two batches of bulk RNAseq?
13 months ago by swbarnes2 14k
1
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0
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888
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Answer: Answer: Problematic experimental design RNA-Seq
13 months ago by swbarnes2 14k
1
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1
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1.1k
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
13 months ago by swbarnes2 14k
0
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1
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2.4k
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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
13 months ago by swbarnes2 14k
2
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3
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2.4k
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Answer: Answer: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
13 months ago by swbarnes2 14k
0
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1
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843
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Comment: Comment: Genecount-difference between HT-seq count, RSEM, and Kallisto
13 months ago by swbarnes2 14k
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0
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663
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Comment: Comment: mRNA counts
13 months ago by swbarnes2 14k
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0
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711
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Answer: Answer: Issue running RSEM
13 months ago by swbarnes2 14k
2,020 results • Page 3 of 41
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