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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
2.2 years ago by swbarnes2 15k
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Answer: Answer: Adding a control sample to bulk RNA-seq
2.2 years ago by swbarnes2 15k
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
2.2 years ago by swbarnes2 15k
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Answer: Answer: DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
2.2 years ago by swbarnes2 15k
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Answer: Answer: sequencing machines output files layout
2.2 years ago by swbarnes2 15k
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Answer: Answer: DESeqDataSetFromMatrix error
2.2 years ago by swbarnes2 15k
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Answer: Answer: Deseq2
2.2 years ago by swbarnes2 15k
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Comment: Comment: htseq-count reports count values for deleted genes
2.2 years ago by swbarnes2 15k
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Comment: Comment: How to Add Mutations to the sequence
2.2 years ago by swbarnes2 15k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
2.2 years ago by swbarnes2 15k
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Comment: Comment: STAR mapping - regarding output files content
2.3 years ago by swbarnes2 15k
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Comment: Comment: RSEM uses different gene lengths for each sample.
2.3 years ago by swbarnes2 15k
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Answer: Answer: DESEQ2 analysis - PCA plot
2.3 years ago by swbarnes2 15k
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Comment: Comment: Can I extract a complete sequence of gene from mapped reads bam file
2.3 years ago by swbarnes2 15k
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882
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Answer: Answer: Add gene counts of same samples run on two lanes (Novaseq)
2.3 years ago by swbarnes2 15k
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Answer: Answer: bcl2fastq not recognizing multiple barcode-mismatch argument
2.4 years ago by swbarnes2 15k
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
2.4 years ago by swbarnes2 15k
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Answer: Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
2.4 years ago by swbarnes2 15k
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1.2k
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Answer: Answer: 10x genomics hashtag samples
2.4 years ago by swbarnes2 15k
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1.2k
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Answer: Answer: DESeq2, Time-course interpretation
2.4 years ago by swbarnes2 15k
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Answer: Answer: Multiple testing correction in RNA-Seq
2.4 years ago by swbarnes2 15k
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Comment: Comment: Transcript quantification
2.4 years ago by swbarnes2 15k
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Answer: Answer: How to create a Seurat object from the `xxx_metadata.txt.gz ` and `xxx_counts.t
2.4 years ago by swbarnes2 15k
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Comment: Comment: Getting sequences from fastq file using Grep command
2.4 years ago by swbarnes2 15k
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Answer: Answer: Getting sequences from fastq file using Grep command
2.4 years ago by swbarnes2 15k
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Comment: Comment: A question about the raw RNA-seq processing workflow
2.4 years ago by swbarnes2 15k
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2.5k
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Comment: Comment: A question about the raw RNA-seq processing workflow
2.5 years ago by swbarnes2 15k
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2.8k
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Answer: Answer: Italicise annotations with pheatmap
2.5 years ago by swbarnes2 15k
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3.8k
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Comment: Comment: Counting intronic reads in bulk RNA-seq
2.5 years ago by swbarnes2 15k
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1.6k
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Comment: Comment: Ambient RNA expression correction
2.5 years ago by swbarnes2 15k
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Answer: Answer: What is the best way to clean bulk RNA-seq data?
2.5 years ago by swbarnes2 15k
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Comment: Comment: RNAseq Data and Pipeline
2.5 years ago by swbarnes2 15k
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Comment: Comment: Is there anyway to cancel CPM normalization?
2.5 years ago by swbarnes2 15k
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Comment: Comment: Single cell chemistry
2.5 years ago by swbarnes2 15k
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3.0k
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Comment: Comment: Single cell chemistry
2.5 years ago by swbarnes2 15k
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3.0k
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Comment: Comment: Single cell chemistry
2.5 years ago by swbarnes2 15k
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3.0k
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Comment: Comment: Single cell chemistry
2.5 years ago by swbarnes2 15k
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2
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3.8k
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Answer: Answer: Counting intronic reads in bulk RNA-seq
2.5 years ago by swbarnes2 15k
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1
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3.0k
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Answer: Answer: Single cell chemistry
2.5 years ago by swbarnes2 15k
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1.3k
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Answer: Answer: How to extract out gene specific reads from concatenated fastq file
2.5 years ago by swbarnes2 15k
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Comment: Comment: Using RNA-seq to detect pathogen sequences in host tissue
2.5 years ago by swbarnes2 15k
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Answer: Answer: rna seq design matrix
2.5 years ago by swbarnes2 15k
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842
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Answer: Answer: Different read numbers for the same samples
2.5 years ago by swbarnes2 15k
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Comment: Comment: On "wings" in volcano plots...
2.5 years ago by swbarnes2 15k
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5.0k
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
2.5 years ago by swbarnes2 15k
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1
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5.0k
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Answer: Answer: Subsetting DESeq data set to compare treatments within one group (multi-group ex
2.5 years ago by swbarnes2 15k
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Comment: Comment: How to better distribute my replicates between two batches of bulk RNAseq?
2.5 years ago by swbarnes2 15k
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1.7k
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Answer: Answer: How to better distribute my replicates between two batches of bulk RNAseq?
2.5 years ago by swbarnes2 15k
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Answer: Answer: Problematic experimental design RNA-Seq
2.5 years ago by swbarnes2 15k
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1
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1.9k
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
2.5 years ago by swbarnes2 15k
2,124 results • Page 5 of 43
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