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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
2.6 years ago by swbarnes2 15k
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4.2k
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Answer: Answer: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
2.6 years ago by swbarnes2 15k
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Comment: Comment: Genecount-difference between HT-seq count, RSEM, and Kallisto
2.6 years ago by swbarnes2 15k
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Comment: Comment: mRNA counts
2.6 years ago by swbarnes2 15k
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Answer: Answer: Issue running RSEM
2.6 years ago by swbarnes2 15k
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1.3k
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Answer: Answer: Fastqs different lanes
2.6 years ago by swbarnes2 15k
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1.6k
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Answer: Answer: batch effect in RNA-Seq
2.6 years ago by swbarnes2 15k
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Comment: Comment: How can I make all my PCA plots the same shape using ggplots?
2.6 years ago by swbarnes2 15k
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1.9k
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Comment: Comment: Is there anyway to cancel CPM normalization?
2.6 years ago by swbarnes2 15k
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1.9k
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Answer: Answer: Is there anyway to cancel CPM normalization?
2.6 years ago by swbarnes2 15k
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2.3k
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Comment: Comment: DESeq2 multiple conditions, time points and sample types
2.6 years ago by swbarnes2 15k
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7.9k
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Answer: Answer: How Can I Compare Differential Expression Data From Mouse And Human?
2.6 years ago by swbarnes2 15k
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1.4k
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Answer: Answer: Detecting heterozygous deletions in NGS sequence data
2.6 years ago by swbarnes2 15k
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1.6k
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Comment: Comment: trimmomatic and STAR alignments
2.6 years ago by swbarnes2 15k
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1.8k
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Comment: Comment: How to tell which exon does a variant located?
2.6 years ago by swbarnes2 15k
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2.0k
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Answer: Answer: Big BCV (Biological Coefficient of Variation) - no sense to continue the analysi
2.7 years ago by swbarnes2 15k
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1.8k
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Answer: Answer: How to combine different "groups" in DESeq2 constrast
2.7 years ago by swbarnes2 15k
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1.2k
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Comment: Comment: HTseq no features
2.7 years ago by swbarnes2 15k
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1.1k
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Answer: Answer: cellranger outcome
2.7 years ago by swbarnes2 15k
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1.0k
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Comment: Comment: DESeq2
2.7 years ago by swbarnes2 15k
2
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7.4k
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Answer: Answer: Batch effect in integrated RNA-seq analysis
2.7 years ago by swbarnes2 15k
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1.3k
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Comment: Comment: want the codes for Deseq2 to perform DEGs.
2.7 years ago by swbarnes2 15k
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1
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11k
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Comment: Comment: Get TPM from RNA counts and gene length?
2.8 years ago by swbarnes2 15k
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1
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11k
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Comment: Comment: Get TPM from RNA counts and gene length?
2.8 years ago by swbarnes2 15k
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1
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1.3k
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Comment: Comment: sRNA seq analysis after trimming adapter
2.8 years ago by swbarnes2 15k
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1.9k
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Comment: Comment: Extract unmapped reads AND reads covering chromosome 6 from a bam file?
2.8 years ago by swbarnes2 15k
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1.7k
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Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
2.8 years ago by swbarnes2 15k
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1
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1.7k
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Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
2.8 years ago by swbarnes2 15k
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1
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1.7k
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Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
2.8 years ago by swbarnes2 15k
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1
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1.8k
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Answer: Answer: Samtools unmapped reads
2.8 years ago by swbarnes2 15k
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0
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3.0k
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Comment: Comment: Mapped reads not mapping to a real sequence?
2.8 years ago by swbarnes2 15k
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2
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3.0k
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Comment: Comment: Question about RNA-Seq data alignment
updated 2.8 years ago by 90k • written 2.8 years ago by 15k
2
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3.0k
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Answer: Answer: Question about RNA-Seq data alignment
2.8 years ago by swbarnes2 15k
0
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1
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3.2k
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Answer: Answer: Samtools mapped and unmapped flags, what is the difference between the flags?
2.8 years ago by swbarnes2 15k
0
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1
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3.0k
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Comment: Comment: Mapped reads not mapping to a real sequence?
2.8 years ago by swbarnes2 15k
1
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0
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2.6k
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Comment: Comment: RNAseq for DE purpose
2.8 years ago by swbarnes2 15k
2
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0
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975
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Comment: Comment: Analyzing bulk RNA-seq
2.8 years ago by swbarnes2 15k
1
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1
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1.9k
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Comment: Comment: How to change every third line in a fastq library
2.8 years ago by swbarnes2 15k
4
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1
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1.9k
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Answer: Answer: Reads are marked as full of mismatches in IGV, but cigar string shows full lengt
2.8 years ago by swbarnes2 15k
1
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1
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2.6k
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Answer: Answer: RNA-seq library size - significant sample discrepency
2.8 years ago by swbarnes2 15k
1
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0
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7.4k
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Answer: Answer: STAR aligner can't map too short reads
2.8 years ago by swbarnes2 15k
1
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0
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1.7k
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Answer: Answer: Is DeSeq2 or EdgeR better for differential expression of QuantSeq data?
2.9 years ago by swbarnes2 15k
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0
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1.2k
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Comment: Comment: Can´t acces Biomart via R anymore
2.9 years ago by swbarnes2 15k
1
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0
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3.5k
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Comment: Comment: How to configure a data set with mouse data to one with human gene names using a
2.9 years ago by swbarnes2 15k
0
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1
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2.5k
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Comment: Comment: how to get fastq file from cellranger?
2.9 years ago by swbarnes2 15k
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1
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2.5k
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Comment: Comment: how to get fastq file from cellranger?
2.9 years ago by swbarnes2 15k
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2
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1.5k
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Comment: Comment: drawing Venn graph
2.9 years ago by swbarnes2 15k
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1
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1.5k
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Comment: Comment: drawing Venn graph
2.9 years ago by swbarnes2 15k
1
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2
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1.3k
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Answer: Answer: RNA sequencing analysis
2.9 years ago by swbarnes2 15k
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1
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1.8k
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Comment: Comment: Human transcriptome STAR multi-mapped problem
2.9 years ago by swbarnes2 15k
2,124 results • Page 6 of 43
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