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Comment: Comment: CellRanger runs into error when running fastq files from SRA
3.3 years ago by swbarnes2 15k
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973
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Comment: Comment: Demultiplexing paired-end illumina data with separated R1 file, R2 file and inde
3.3 years ago by swbarnes2 15k
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1.6k
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Answer: Answer: Help with adding variables to PCA
3.3 years ago by swbarnes2 15k
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1
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1.9k
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Answer: Answer: merging data; remove extra rows
3.3 years ago by swbarnes2 15k
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2.8k
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Comment: Comment: DEXSeq - No Exon Counts
3.3 years ago by swbarnes2 15k
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2.8k
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Answer: Answer: DEXSeq - No Exon Counts
3.3 years ago by swbarnes2 15k
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2.8k
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Comment: Comment: DEXSeq - No Exon Counts
3.3 years ago by swbarnes2 15k
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1.3k
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Answer: Answer: Clustering analysis for scRNA-seq
3.3 years ago by swbarnes2 15k
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1.6k
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Comment: Comment: How to select isoform which shows the highest expression within a gene?
3.3 years ago by swbarnes2 15k
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0
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1.3k
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Comment: Comment: Error when I try to change rownames in my list
3.3 years ago by swbarnes2 15k
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0
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956
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Comment: Comment: Plotting multiple genes across 4- species
3.3 years ago by swbarnes2 15k
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5.1k
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Comment: Comment: How to get TPM values from the STAR output?
3.3 years ago by swbarnes2 15k
2
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1
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1.3k
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Answer: Answer: Error when I try to change rownames in my list
3.3 years ago by swbarnes2 15k
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1
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5.1k
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Comment: Comment: How to get TPM values from the STAR output?
3.3 years ago by swbarnes2 15k
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5.1k
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Comment: Comment: How to get TPM values from the STAR output?
3.3 years ago by swbarnes2 15k
2
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1
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5.1k
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Answer: Answer: How to get TPM values from the STAR output?
3.3 years ago by swbarnes2 15k
1
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0
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978
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Answer: Answer: Expected counts in GTEX
3.3 years ago by swbarnes2 15k
1
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0
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2.0k
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Answer: Answer: BWA MEM/Can BWA use bam file to re-align it to the new ref.fa?
3.4 years ago by swbarnes2 15k
2
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0
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2.8k
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Answer: Answer: sam files
3.4 years ago by swbarnes2 15k
1
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1
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1.2k
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Comment: Comment: Error to create a dds DESeq2 object.
3.4 years ago by swbarnes2 15k
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1
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1.2k
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Comment: Comment: Error to create a dds DESeq2 object.
3.4 years ago by swbarnes2 15k
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1.9k
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Comment: Comment: RNASeq data has 3 files R1, R2 and R3, which one is the barcode file?
3.4 years ago by swbarnes2 15k
2
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1.2k
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Answer: Answer: BWA MEM Multiple Primary Alignments
3.4 years ago by swbarnes2 15k
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0
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4.0k
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Answer: Answer: Supplementary alignments in BAM-file
3.4 years ago by swbarnes2 15k
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2
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1.5k
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Comment: Comment: BWA-mem - Different alignment numbers to same reference sequence
3.4 years ago by swbarnes2 15k
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0
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1.6k
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Comment: Comment: SCRNA analysis
3.4 years ago by swbarnes2 15k
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2
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3.1k
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Comment: Comment: how many sequences are in genome file
3.4 years ago by swbarnes2 15k
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0
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808
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Comment: Comment: understanding similarity in different sra files
3.5 years ago by swbarnes2 15k
1
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1
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1.0k
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Answer: Answer: Mouse SNPs to genes
3.5 years ago by swbarnes2 15k
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0
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1.8k
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Comment: Comment: Counts from STAR with stranded protocol
3.5 years ago by swbarnes2 15k
3
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2
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2.2k
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Answer: Answer: Best practice for merging across lanes
3.5 years ago by swbarnes2 15k
1
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0
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754
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Answer: Answer: Align unmapped reads to reference vector sequence
3.5 years ago by swbarnes2 15k
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1
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1.8k
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Answer: Answer: Counts from STAR with stranded protocol
3.5 years ago by swbarnes2 15k
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0
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1.5k
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Comment: Comment: DESeq2 use of factors for colData
3.5 years ago by swbarnes2 15k
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0
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3.7k
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Comment: Comment: Difference in total gene counts between samples
3.5 years ago by swbarnes2 15k
0
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1
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1.5k
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Answer: Answer: DESeq2 use of factors for colData
3.5 years ago by swbarnes2 15k
1
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1
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3.7k
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Comment: Comment: Difference in total gene counts between samples
3.5 years ago by swbarnes2 15k
0
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1
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3.7k
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Comment: Comment: Difference in total gene counts between samples
3.5 years ago by swbarnes2 15k
0
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0
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2.2k
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Comment: Comment: How to create kallisto index that does not include ribosomal genes
3.5 years ago by swbarnes2 15k
0
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0
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2.9k
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Comment: Comment: Making a pheatmap legend with superscripts
3.5 years ago by swbarnes2 15k
0
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1
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2.9k
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Comment: Comment: Making a pheatmap legend with superscripts
3.5 years ago by swbarnes2 15k
1
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1
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1.0k
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Answer: Answer: RNA-seq Differential analysis general question of interpreting data results.
3.5 years ago by swbarnes2 15k
1
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5
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2.9k
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Making a pheatmap legend with superscripts
pheatmap
updated 3.5 years ago by 45k • written 3.5 years ago by 15k
0
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1
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3.7k
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Comment: Comment: Difference in total gene counts between samples
3.5 years ago by swbarnes2 15k
0
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0
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1.6k
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Comment: Comment: When identifying DEGs, should all the libraries be normalized together?
3.5 years ago by swbarnes2 15k
1
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1
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1.6k
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Answer: Answer: When identifying DEGs, should all the libraries be normalized together?
3.5 years ago by swbarnes2 15k
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0
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2.0k
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Comment: Comment: unsorting a bam file
3.5 years ago by swbarnes2 15k
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0
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840
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Answer: Answer: P values for large sample size comparisons
3.5 years ago by swbarnes2 15k
2
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0
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1.5k
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Answer: Answer: Deciphering cigar strings
3.5 years ago by swbarnes2 15k
0
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1
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1.6k
views
Comment: Comment: DESeq after ComBat_seq
3.5 years ago by swbarnes2 15k
2,124 results • Page 9 of 43
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