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Comment: Comment: Autosome/ sex chromosome assembly error
3 days ago by samuel.a.odonnell ▴ 630
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613
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Comment: Comment: replicate SyRi/plotsr output plot in R
8 days ago by samuel.a.odonnell ▴ 630
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1.4k
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Answer: Answer: Constructing a bread wheat pangenome graph using PGGB: per-chromosome vs. whole-
14 days ago by samuel.a.odonnell ▴ 630
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540
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Answer: Answer: Repetitive regions annotation
15 days ago by samuel.a.odonnell ▴ 630
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1
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897
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Comment: Comment: Polishing raw nanopore reads with Pacbio
7 months ago by samuel.a.odonnell ▴ 630
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897
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Comment: Comment: Polishing raw nanopore reads with Pacbio
7 months ago by samuel.a.odonnell ▴ 630
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5
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897
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Polishing raw nanopore reads with Pacbio
polishing assembly
7 months ago by samuel.a.odonnell ▴ 630
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749
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Comment: Comment: Type of Pangenome Type/program to use for fungal isolates of the same species, b
8 months ago by samuel.a.odonnell ▴ 630
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1
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1.8k
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Comment: Comment: Phylogenetic tree from whole genome using BUSCO
8 months ago by samuel.a.odonnell ▴ 630
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3.2k
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Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
12 months ago by samuel.a.odonnell ▴ 630
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864
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Comment: Comment: Assembly Question
14 months ago by samuel.a.odonnell ▴ 630
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0
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981
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Comment: Comment: Oxford Nanopore Sequencing Output Related
15 months ago by samuel.a.odonnell ▴ 630
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1.7k
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Comment: Comment: Eukaryotic genome Assembly
16 months ago by samuel.a.odonnell ▴ 630
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1
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678
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Comment: Comment: genome assembly for a pathogens
16 months ago by samuel.a.odonnell ▴ 630
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1
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2.4k
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Comment: Comment: SPADES Result Comparison
16 months ago by samuel.a.odonnell ▴ 630
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834
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Comment: Comment: Mismatch between number of reads in fastq and mapped reads
17 months ago by samuel.a.odonnell ▴ 630
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0
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3.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
17 months ago by samuel.a.odonnell ▴ 630
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1
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3.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
17 months ago by samuel.a.odonnell ▴ 630
1
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1
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3.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
17 months ago by samuel.a.odonnell ▴ 630
1
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0
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3.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
17 months ago by samuel.a.odonnell ▴ 630
2
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2
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2.7k
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Comment: Comment: Removing duplicates
18 months ago by samuel.a.odonnell ▴ 630
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1
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2.7k
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Comment: Comment: Removing duplicates
18 months ago by samuel.a.odonnell ▴ 630
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1.5k
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Comment: Comment: Porechop demulitplexing of nanopore sequencing data and barcode bins for each sa
2.1 years ago by samuel.a.odonnell ▴ 630
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0
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5.4k
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Comment: Comment: Short Read Data Genome Assembly
2.2 years ago by samuel.a.odonnell ▴ 630
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1
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2.8k
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Comment: Comment: The GATK "The given bam input has no sample names." error
2.2 years ago by samuel.a.odonnell ▴ 630
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1.8k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
2.2 years ago by samuel.a.odonnell ▴ 630
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1
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1.8k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
2.2 years ago by samuel.a.odonnell ▴ 630
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1
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1.1k
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Comment: Comment: Expect heterozygous variant from reads
2.3 years ago by samuel.a.odonnell ▴ 630
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0
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1.8k
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Comment: Comment: vg: Mapping fewer reads to a genome graph than a linear reference
2.5 years ago by samuel.a.odonnell ▴ 630
1
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1
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2.9k
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Comment: Comment: How to rerun Guppy Basecalling (with both fast5_pass and fast5_fail)
2.6 years ago by samuel.a.odonnell ▴ 630
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0
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1.9k
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Comment: Comment: MissAssembly Correction
2.7 years ago by samuel.a.odonnell ▴ 630
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1
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1.9k
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Comment: Comment: MissAssembly Correction
2.7 years ago by samuel.a.odonnell ▴ 630
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0
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918
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Answer: Answer: scaffold assembly inro chromosomal assembly using reference genome
2.8 years ago by samuel.a.odonnell ▴ 630
2
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1
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2.1k
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Comment: Comment: Problem with NextDenovo fungal assembly
2.8 years ago by samuel.a.odonnell ▴ 630
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0
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804
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Comment: Comment: Tools for annotating predicted genes?
2.8 years ago by samuel.a.odonnell ▴ 630
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0
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2.7k
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Comment: Comment: minimap2, before or after assembly?
2.9 years ago by samuel.a.odonnell ▴ 630
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0
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1.4k
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Comment: Comment: Filtering mitochondrion reads from FastQ files
2.9 years ago by samuel.a.odonnell ▴ 630
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0
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2.3k
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Comment: Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
3.0 years ago by samuel.a.odonnell ▴ 630
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0
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2.3k
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Comment: Comment: Low basecalling of raw ONT data
3.0 years ago by samuel.a.odonnell ▴ 630
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0
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2.0k
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Comment: Comment: Assembly size is double the genome size despite specifying --genome-size in flye
3.0 years ago by samuel.a.odonnell ▴ 630
2
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1
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1.1k
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Comment: Comment: Why SNPs with read depth > 100 or 200 were removed?
3.1 years ago by samuel.a.odonnell ▴ 630
2
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0
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1.5k
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Comment: Comment: Help with geom_dotplot() script
3.1 years ago by samuel.a.odonnell ▴ 630
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0
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1.3k
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Comment: Comment: How can I make a reference genome from multiple genomes?
3.1 years ago by samuel.a.odonnell ▴ 630
4
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1
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1.0k
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assembly based phylogeny
whole-genome phylogenetics assembly
updated 3.2 years ago by ★ 1.8k • written 3.2 years ago by ▴ 630
2
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1
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1.6k
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Answer: Answer: How do I input one fasta file for an entire reference genome?
3.2 years ago by samuel.a.odonnell ▴ 630
1
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1
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985
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Comment: Comment: Unexpected coverage across genome
3.2 years ago by samuel.a.odonnell ▴ 630
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0
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1.5k
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
3.2 years ago by samuel.a.odonnell ▴ 630
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0
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1.6k
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Comment: Comment: Convert fasta to Fastq/bam
3.2 years ago by samuel.a.odonnell ▴ 630
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0
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1.6k
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Comment: Comment: Variant calling for scaffold genome
3.4 years ago by samuel.a.odonnell ▴ 630
1
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1
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1.5k
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Comment: Comment: A question about SPAdes
3.5 years ago by samuel.a.odonnell ▴ 630
130 results • Page 1 of 3
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