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Answer: A: Best trimming tool
updated 5.6 years ago by 43k • written 8.2 years ago by 6.0k
3
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3.4k
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Answer: A: How To Process Large Chipseq Data?
updated 5.6 years ago by 43k • written 13.8 years ago by 6.0k
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1.9k
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Answer: A: Can renaming, copying, or moving the omics data file corrupt it?
5.7 years ago by Ian 6.0k
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4.1k
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Answer: A: How to visualize Hi-C bed file format?
5.7 years ago by Ian 6.0k
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2.8k
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Answer: A: Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
5.7 years ago by Ian 6.0k
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2
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1.8k
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Answer: A: Using HTseq-count for Pseudomonas Aeruginosa data
5.7 years ago by Ian 6.0k
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1.0k
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Answer: A: how to determine bacteria relatedness from two variant calls
5.7 years ago by Ian 6.0k
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1.8k
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Answer: A: How find correlations between ChIP-seq tracks?
5.8 years ago by Ian 6.0k
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2.4k
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Answer: A: Method for creating an EMBL formatted annotated sequence?
6.2 years ago by Ian 6.0k
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1.9k
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Answer: A: What shall I do with this RNA-seq data that have no replicates?
6.3 years ago by Ian 6.0k
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6.8k
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Answer: A: How to repair *all* problems identified by FastQC?
6.4 years ago by Ian 6.0k
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1
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3.2k
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Answer: A: Biological significance of Fold_enrichment in macs2
6.4 years ago by Ian 6.0k
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1.5k
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Answer: A: Features for detection of gene.
6.4 years ago by Ian 6.0k
9
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1
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20k
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Answer: A: Normalized Bigwig Files
6.7 years ago by Ian 6.0k
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3.3k
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Answer: A: Differential chip-seq peak calling using macs2
6.9 years ago by Ian 6.0k
4
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1
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7.9k
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Answer: A: How to choose Trimmomatic's parameter 'MINLEN '?
6.9 years ago by Ian 6.0k
2
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2.9k
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Answer: A: ChIP-seq Input replicate correlation
6.9 years ago by Ian 6.0k
2
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1
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6.1k
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Answer: A: Filter MACS peaks by enrichment/FDR?
7.0 years ago by Ian 6.0k
1
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1
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1.9k
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Answer: A: ChIP on chip array cover genome or promoter regions?
7.2 years ago by Ian 6.0k
3
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1
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7.4k
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Answer: A: Paired end and single end with MACS2
7.2 years ago by Ian 6.0k
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0
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1.2k
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Answer: A: Chip Seq controls
7.4 years ago by Ian 6.0k
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1
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2.2k
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Answer: A: How analyse chip-exo paired read data and get BigWig or Peaks called?
7.4 years ago by Ian 6.0k
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1
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5.0k
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Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
7.4 years ago by Ian 6.0k
2
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1
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4.1k
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Answer: A: call differential peaks H3K27ac
7.5 years ago by Ian 6.0k
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0
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5.2k
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Answer: A: Tag size in MACS and MACS2
7.5 years ago by Ian 6.0k
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0
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1.5k
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Answer: A: TFBS finding in whole genome
7.8 years ago by Ian 6.0k
5
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0
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31k
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Answer: A: Is Paired End analysis possible with FASTQC?
8.0 years ago by Ian 6.0k
1
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1
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50k
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Answer: A: Visualization of ChIP-seq data using Heatmaps
8.1 years ago by Ian 6.0k
3
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3
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64k
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Answer: A: How To Convert Gencode Gtf Into Bed Format ?
updated 8.2 years ago by 35k • written 11.5 years ago by 6.0k
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0
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2.2k
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Answer: Answer: Does sequencing depth affect MACS2 q-values?
updated 21 months ago by 43k • written 8.2 years ago by 6.0k
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1
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3.7k
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Answer: A: Peak calling with MACS for DNase-seq data and Peak annotation by Homer
8.4 years ago by Ian 6.0k
0
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1
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1.9k
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Answer: A: How to test for enrichment of three bed files that 'may' form a complex
8.4 years ago by Ian 6.0k
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0
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3.7k
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Answer: A: Filtering fastq (by quality score and length), optimum criteria?
8.5 years ago by Ian 6.0k
0
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1
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6.8k
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Answer: Answer: Bowtie2 or RSEM (with Bowtie2) alignment of PE reads with reference transcriptom
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
3
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0
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3.2k
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Answer: Answer: The way to compare ChIPSeq peaks enrichment level in different samples
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
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1
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2.5k
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Answer: Answer: mfold parameter in MACS on Galaxy/ Galaxy Cistrome
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
2
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1
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6.5k
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Answer: Answer: MACS2 for K27me3 peak calling
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
1
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0
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3.2k
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Answer: Answer: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
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0
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8.7k
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Answer: Answer: randomly shuffle BAM file
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
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0
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1.9k
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Answer: Answer: Chip-Chip peaks calling
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
1
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1
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5.1k
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Answer: Answer: How to extract peak coordinates for chip-seq bedgraph file ?
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
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1
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1.7k
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Answer: Answer: Peak calling on FastX-collapser processed data
updated 16 months ago by 43k • written 8.9 years ago by 6.0k
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1
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6.7k
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Answer: Answer: Paired bowtie2: 91% overall alignment but 0.01% concordant - should I be worried
updated 15 months ago by 43k • written 8.9 years ago by 6.0k
4
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0
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3.5k
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Answer: Answer: How to add gene annotation to a UCSC assembly hub?
updated 23 months ago by 43k • written 9.1 years ago by 6.0k
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0
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8.6k
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Answer: Answer: color a sequence alignment
updated 23 months ago by 43k • written 9.1 years ago by 6.0k
0
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1
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7.4k
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Answer: Answer: Top MACS peaks from ChIP-seq look identical to input
updated 23 months ago by 43k • written 9.1 years ago by 6.0k
0
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0
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2.2k
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Answer: Answer: how to peak caling the abnormal chipseq bam files against the input
updated 23 months ago by 43k • written 9.2 years ago by 6.0k
1
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1
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2.6k
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Answer: Answer: Galaxy and ProFTP
updated 2.0 years ago by 43k • written 9.2 years ago by 6.0k
0
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1
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10k
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Answer: Answer: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 2.0 years ago by 43k • written 9.2 years ago by 6.0k
1
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0
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9.7k
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Answer: Answer: How do I view the height / distribution of ChIP-seq peaks?
updated 2.1 years ago by 43k • written 9.2 years ago by 6.0k
233 results • Page 2 of 5
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