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5
votes
2
replies
6.8k
views
How should I interpret this Mummer output files?
mapping mummer show-coords
updated 3.4 years ago by ▴ 20 • written 11.4 years ago by ▴ 690
1
vote
2
replies
3.7k
views
ERRBS Methylation data analysis
next-gen Bisulfite methylation homer ERRBS
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 690
2
votes
3
replies
3.7k
views
Can we crosscheck log2 fold change in gene expression data?
RNA-Seq
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 690
1
vote
3
replies
3.3k
views
Best software to identify differentially methylated regions in Chipseq data?
ChIP-Seq differentially methylated genes
updated 3.4 years ago by 45k • written 11.1 years ago by ▴ 690
0
votes
1
reply
114k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 5.4 years ago by 45k • written 13.5 years ago by ▴ 690
0
votes
0
replies
114k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 5.4 years ago by 45k • written 11.1 years ago by ▴ 690
0
votes
0
replies
3.0k
views
Comment: C: [Samtools] How many hours does it take to call SNPs and indels?
updated 5.8 years ago by 45k • written 11.4 years ago by ▴ 690
1
vote
0
replies
5.0k
views
Answer: A: Cuffcompare: Unable To Map Reference Gene Names To Cufflinks Output
updated 5.8 years ago by 45k • written 11.4 years ago by ▴ 690
5
votes
5
replies
4.7k
views
[DESeq2 multiple treatments vs. 1-by-1] Inconsistant p-adj
RNA-Seq deseq2
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 690
0
votes
0
replies
8.6k
views
Comment: C: Obtaining "Gene-Association" File For Go Term Analysis
updated 6.1 years ago by 45k • written 11.2 years ago by ▴ 690
2
votes
4
replies
4.5k
views
Cummerbund Returns 0 Sample
cuffdiff cummerbund
updated 8.0 years ago by ▴ 10 • written 11.7 years ago by ▴ 690
0
votes
1
reply
4.6k
views
WGCNA defining parameters for soft threshold in R?
WGCNA R
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
4
votes
6
replies
12k
views
Cnvnator Output File
updated 8.6 years ago by ▴ 10 • written 13.5 years ago by ▴ 690
6
votes
6
replies
7.0k
views
[Samtools] How to extract reads matching a given sequence
alignment samtools sequence sequencing
updated 4.1 years ago by 45k • written 11.4 years ago by ▴ 690
8
votes
7
replies
13k
views
DESeq2 very high p-values and padj
DESeq2 p-values RNA-Seq
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 690
0
votes
0
replies
4.2k
views
Comment: C: BWA batch script does not execute
9.5 years ago by madkitty ▴ 690
0
votes
0
replies
4.2k
views
Comment: C: BWA batch script does not execute
9.5 years ago by madkitty ▴ 690
0
votes
0
replies
4.2k
views
Comment: C: BWA batch script does not execute
9.5 years ago by madkitty ▴ 690
2
votes
11
replies
4.2k
views
BWA batch script does not execute
bwa
updated 9.5 years ago by ★ 3.8k • written 9.5 years ago by ▴ 690
0
votes
2
replies
8.6k
views
Comment: C: How to align 100 samples with BWA?
9.6 years ago by madkitty ▴ 690
0
votes
1
reply
8.6k
views
Comment: C: How to align 100 samples with BWA?
9.6 years ago by madkitty ▴ 690
0
votes
1
reply
8.6k
views
Comment: C: How to align 100 samples with BWA?
9.6 years ago by madkitty ▴ 690
0
votes
1
reply
8.6k
views
Comment: C: How to align 100 samples with BWA?
9.6 years ago by madkitty ▴ 690
0
votes
0
replies
8.6k
views
Comment: C: How to align 100 samples with BWA?
9.6 years ago by madkitty ▴ 690
0
votes
0
replies
8.6k
views
Comment: C: How to align 100 samples with BWA?
9.6 years ago by madkitty ▴ 690
7
votes
14
replies
8.6k
views
How to align 100 samples with BWA?
next-gen exome alignment bwa
updated 9.6 years ago by 12k • written 9.6 years ago by ▴ 690
2
votes
10
replies
8.4k
views
Samtools Error Message, Please Help !
samtools bam sam
updated 9.6 years ago by 20 • written 13.3 years ago by ▴ 690
19
votes
5
replies
10k
views
Is There A Tool (Samtools, Picard ..) To Filter Certain Flags In Bam File ?
samtools bam
updated 9.7 years ago by 20 • written 13.4 years ago by ▴ 690
4
votes
5
replies
5.0k
views
Need help with heatmap.2
heatmap RNA-Seq
updated 3.8 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
0
replies
2.1k
views
Which software/algorithm do you use to analyze methylation data
bisulfilte sequencing methylation
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 690
0
votes
2
replies
4.2k
views
Spotfire: Issue when creating heat maps
microarray spotfire heatmap
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
1
vote
3
replies
5.8k
views
WGCNA how to pick the soft threshold with R
WGCNA R
updated 10.4 years ago by 5.1k • written 10.5 years ago by ▴ 690
0
votes
1
reply
12k
views
Comment: C: Batch Effect normalization with Combat generates error
10.5 years ago by madkitty ▴ 690
0
votes
1
reply
12k
views
Comment: Comment: Batch Effect normalization with Combat generates error
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
1
reply
12k
views
Comment: Comment: Batch Effect normalization with Combat generates error
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
2
votes
14
replies
12k
views
Batch Effect normalization with Combat generates error
microarray normalization combat
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
0
replies
12k
views
Comment: Comment: Batch Effect normalization with Combat generates error
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
1
reply
12k
views
Comment: Comment: Batch Effect normalization with Combat generates error
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
1
reply
12k
views
Comment: Comment: Batch Effect normalization with Combat generates error
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
2
votes
1
reply
16k
views
How to use Combat in R??
R software-error Combat
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
2
replies
3.0k
views
Answer: Answer: display single dbSNP entry in UCSC genome browser
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
0
replies
3.6k
views
How to build similarity matrix in WGCNA?
r software-error wgcna matrix
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
1
reply
5.8k
views
Comment: C: WGCNA how to pick the soft threshold with R
10.5 years ago by madkitty ▴ 690
6
votes
2
replies
5.2k
views
What pipeline should I use with WGCNA?
WGCNA
updated 21 months ago by ▴ 40 • written 10.5 years ago by ▴ 690
0
votes
1
reply
4.4k
views
Comment: Comment: Samtools Error: Creating a Consensus fastq Sequence from Bam File
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
1
reply
6.4k
views
Comment: Comment: output of bedtools bamtofastq are empty files
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
0
replies
6.4k
views
Comment: Comment: output of bedtools bamtofastq are empty files
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
1
vote
1
reply
3.7k
views
Soft threshold in WGCNA
wgcna
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
0
votes
0
replies
3.6k
views
Comment: C: DESeq2 - Warning message
10.5 years ago by madkitty ▴ 690
0
votes
0
replies
5.5k
views
Comment: Comment: Wgcna -Dilemma In Choosing Soft Threshold
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
189 results • Page 1 of 4
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