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0
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0
replies
446
views
Answer:
Answer: Help finding GTEx v8 Imputed Genotypes
6 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
822
views
Answer:
Answer: Cloud Computing Services available?
6 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
400
views
Comment:
Comment: Long variant splits to several variants by variant callers
8 months ago by
vdauwera
★ 1.2k
1
vote
0
replies
840
views
Answer:
Answer: GATK command for mutect2
13 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
1.4k
views
Comment:
Comment: Why GATK4 doesn't carry out local realignment around indels ?
13 months ago by
vdauwera
★ 1.2k
1
vote
1
reply
1.4k
views
Comment:
Comment: Why GATK4 doesn't carry out local realignment around indels ?
13 months ago by
vdauwera
★ 1.2k
3
votes
2
replies
1.4k
views
Answer:
Answer: Why GATK4 doesn't carry out local realignment around indels ?
13 months ago by
vdauwera
★ 1.2k
1
vote
1
reply
675
views
Answer:
Answer: ApplyBQSR won't recognise output argument
15 months ago by
vdauwera
★ 1.2k
2
votes
1
reply
1.9k
views
Answer:
Answer: Can anyone share me a good GATK4 workflow
15 months ago by
vdauwera
★ 1.2k
0
votes
1
reply
960
views
Comment:
Comment: Strange speed up in GATK LeftAlignIndels
16 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
1.3k
views
Comment:
Comment: Use of GenotypeGVCFs in population genetic studies
17 months ago by
vdauwera
★ 1.2k
0
votes
1
reply
1.3k
views
Comment:
Comment: Use of GenotypeGVCFs in population genetic studies
17 months ago by
vdauwera
★ 1.2k
1
vote
0
replies
796
views
Comment:
Comment: GATK snap calling - combine exome and WGS?
17 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
671
views
Comment:
Comment: Genotyping low read depth sequences using GATK
17 months ago by
vdauwera
★ 1.2k
0
votes
1
reply
671
views
Answer:
Answer: Genotyping low read depth sequences using GATK
17 months ago by
vdauwera
★ 1.2k
2
votes
1
reply
796
views
Answer:
Answer: GATK snap calling - combine exome and WGS?
17 months ago by
vdauwera
★ 1.2k
1
vote
0
replies
578
views
Answer:
Answer: Adding read groups to mark duplicated bam file
17 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
425
views
Answer:
Answer: GATK call arm level chromosome copy number variations (cnv)
17 months ago by
vdauwera
★ 1.2k
2
votes
0
replies
1.2k
views
Answer:
Answer: GATK : VariantRecalibrator no positional argument is defined for this tool.
17 months ago by
vdauwera
★ 1.2k
1
vote
0
replies
538
views
Comment:
Comment: How to give multiple input files to the gatk ?
17 months ago by
vdauwera
★ 1.2k
1
vote
0
replies
2.0k
views
Comment:
Comment: Input arguments for AddOrReplaceReadGroups (Picard) from fastq
19 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
1.8k
views
Comment:
Comment: Problems running gatk - gatk: command not found
19 months ago by
vdauwera
★ 1.2k
0
votes
0
replies
1.0k
views
Comment:
C: GATK read groups for instruments from BGI Tech like BGISEQ-500?
2.1 years ago by
vdauwera
★ 1.2k
2
votes
1
reply
1.0k
views
Answer:
A: GATK read groups for instruments from BGI Tech like BGISEQ-500?
2.1 years ago by
vdauwera
★ 1.2k
1
vote
0
replies
758
views
Tool:
Introducing WARP: A collection of cloud-optimized workflows for biological data processing and analysis
genomics
single-cell
epigenomics
workflows
wdl
Tool
2.3 years ago by
vdauwera
★ 1.2k
0
votes
1
reply
1.3k
views
Answer:
A: How do you get input files to a cromwell server
2.8 years ago by
vdauwera
★ 1.2k
0
votes
1
reply
3.7k
views
Comment:
C: Scientific Technical Writer -- Help us write papers about GATK!
updated 3.1 years ago by
Ram
38k • written 8.8 years ago by
vdauwera
★ 1.2k
2
votes
0
replies
988
views
Job:
Scientific writer for GATK at Broad Institute Data Sciences Platform
gatk
Job
3.5 years ago by
vdauwera
★ 1.2k
1
vote
1
reply
8.8k
views
Comment:
C: How Much Does It Cost To Align A Flowcell In The Cloud?
3.6 years ago by
vdauwera
★ 1.2k
0
votes
0
replies
5.5k
views
Comment:
C: GATK Workflow for GATK in Cancer Samples
3.6 years ago by
vdauwera
★ 1.2k
1
vote
1
reply
8.8k
views
Comment:
C: How Much Does It Cost To Align A Flowcell In The Cloud?
3.6 years ago by
vdauwera
★ 1.2k
2
votes
1
reply
8.8k
views
Comment:
C: How Much Does It Cost To Align A Flowcell In The Cloud?
updated 3.8 years ago by
Ram
38k • written 3.8 years ago by
vdauwera
★ 1.2k
2
votes
0
replies
991
views
Answer:
A: GATK best practices for Broad-produced NGS data
4.2 years ago by
vdauwera
★ 1.2k
3
votes
1
reply
2.9k
views
Answer:
A: Bash vs WDL for running GATK
updated 4.2 years ago by
GenoMax
125k • written 4.2 years ago by
vdauwera
★ 1.2k
3
votes
1
reply
3.5k
views
Answer:
A: Can someone please help me run any GATK4 pipeline?
4.7 years ago by
vdauwera
★ 1.2k
4
votes
1
reply
2.6k
views
Answer:
A: GATK4 local computing workflow
4.8 years ago by
vdauwera
★ 1.2k
3
votes
1
reply
3.9k
views
Answer:
A: Strategy in WGS variant calling using GATK (CombineGVCF step)
4.8 years ago by
vdauwera
★ 1.2k
0
votes
0
replies
1.1k
views
Comment:
A: InDel marker using GATK and Mummer
4.9 years ago by
vdauwera
★ 1.2k
6
votes
1
reply
7.5k
views
Answer:
A: Variant Calls: Freebayes vs GATK
4.9 years ago by
vdauwera
★ 1.2k
2
votes
0
replies
2.9k
views
Answer:
A: GATK4 training for beginners
4.9 years ago by
vdauwera
★ 1.2k
3
votes
0
replies
8.7k
views
Answer:
A: Realignment disappeared in gatk4
4.9 years ago by
vdauwera
★ 1.2k
2
votes
0
replies
7.0k
views
Comment:
C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
4.9 years ago by
vdauwera
★ 1.2k
3
votes
0
replies
1.7k
views
News:
Deep learning in GATK4
GATK4
GATK
deep learning
News
5.1 years ago by
vdauwera
★ 1.2k
1
vote
0
replies
1.2k
views
News:
Free credits for running GATK4 pipelines in the cloud
GATK
GATK4
cloud
News
5.1 years ago by
vdauwera
★ 1.2k
1
vote
0
replies
1.6k
views
Comment:
C: Are you using GATK ?
5.1 years ago by
vdauwera
★ 1.2k
0
votes
1
reply
1.6k
views
Comment:
C: Are you using GATK ?
5.3 years ago by
vdauwera
★ 1.2k
0
votes
1
reply
1.6k
views
Comment:
C: Are you using GATK ?
5.3 years ago by
vdauwera
★ 1.2k
0
votes
0
replies
1.1k
views
Comment:
C: GATK returns to a fully open-source license
5.7 years ago by
vdauwera
★ 1.2k
2
votes
0
replies
3.9k
views
Answer:
A: Open Source Compliant Diploid Variant Caller comparable to GATK Haplotype Caller
5.7 years ago by
vdauwera
★ 1.2k
1
vote
0
replies
7.4k
views
Answer:
A: What Are The Open Source Alternatives To Gatk?
5.7 years ago by
vdauwera
★ 1.2k
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