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Answer: Answer: Help finding GTEx v8 Imputed Genotypes
10 months ago by vdauwera ★ 1.2k
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1.0k
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Answer: Answer: Cloud Computing Services available?
10 months ago by vdauwera ★ 1.2k
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0
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455
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Comment: Comment: Long variant splits to several variants by variant callers
12 months ago by vdauwera ★ 1.2k
1
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0
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943
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Answer: Answer: GATK command for mutect2
17 months ago by vdauwera ★ 1.2k
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0
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1.9k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
17 months ago by vdauwera ★ 1.2k
1
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1
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1.9k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
17 months ago by vdauwera ★ 1.2k
3
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2
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1.9k
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Answer: Answer: Why GATK4 doesn't carry out local realignment around indels ?
17 months ago by vdauwera ★ 1.2k
1
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1
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810
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Answer: Answer: ApplyBQSR won't recognise output argument
19 months ago by vdauwera ★ 1.2k
2
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1
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2.3k
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Answer: Answer: Can anyone share me a good GATK4 workflow
19 months ago by vdauwera ★ 1.2k
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1
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1.1k
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Comment: Comment: Strange speed up in GATK LeftAlignIndels
20 months ago by vdauwera ★ 1.2k
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0
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1.5k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
21 months ago by vdauwera ★ 1.2k
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1
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1.5k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
21 months ago by vdauwera ★ 1.2k
1
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0
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858
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Comment: Comment: GATK snap calling - combine exome and WGS?
21 months ago by vdauwera ★ 1.2k
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0
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755
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Comment: Comment: Genotyping low read depth sequences using GATK
21 months ago by vdauwera ★ 1.2k
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1
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755
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Answer: Answer: Genotyping low read depth sequences using GATK
21 months ago by vdauwera ★ 1.2k
2
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1
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858
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Answer: Answer: GATK snap calling - combine exome and WGS?
21 months ago by vdauwera ★ 1.2k
1
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0
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684
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Answer: Answer: Adding read groups to mark duplicated bam file
21 months ago by vdauwera ★ 1.2k
0
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0
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489
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Answer: Answer: GATK call arm level chromosome copy number variations (cnv)
21 months ago by vdauwera ★ 1.2k
2
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0
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1.5k
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Answer: Answer: GATK : VariantRecalibrator no positional argument is defined for this tool.
21 months ago by vdauwera ★ 1.2k
1
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0
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633
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Comment: Comment: How to give multiple input files to the gatk ?
21 months ago by vdauwera ★ 1.2k
1
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0
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2.4k
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Comment: Comment: Input arguments for AddOrReplaceReadGroups (Picard) from fastq
23 months ago by vdauwera ★ 1.2k
0
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0
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2.2k
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Comment: Comment: Problems running gatk - gatk: command not found
23 months ago by vdauwera ★ 1.2k
0
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0
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1.2k
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Comment: C: GATK read groups for instruments from BGI Tech like BGISEQ-500?
2.4 years ago by vdauwera ★ 1.2k
2
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1
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1.2k
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Answer: A: GATK read groups for instruments from BGI Tech like BGISEQ-500?
2.4 years ago by vdauwera ★ 1.2k
1
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0
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804
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Tool: Introducing WARP: A collection of cloud-optimized workflows for biological data processing and analysis
genomics single-cell epigenomics workflows wdl Tool
2.6 years ago by vdauwera ★ 1.2k
0
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1
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1.4k
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Answer: A: How do you get input files to a cromwell server
3.1 years ago by vdauwera ★ 1.2k
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1
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3.8k
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Comment: C: Scientific Technical Writer -- Help us write papers about GATK!
updated 3.5 years ago by 39k • written 9.1 years ago by ★ 1.2k
2
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0
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1.1k
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Job: Scientific writer for GATK at Broad Institute Data Sciences Platform
gatk
updated 3 days ago by 39k • written 3.8 years ago by ★ 1.2k
1
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1
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9.1k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
3.9 years ago by vdauwera ★ 1.2k
0
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0
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5.7k
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Comment: C: GATK Workflow for GATK in Cancer Samples
3.9 years ago by vdauwera ★ 1.2k
1
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1
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9.1k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
3.9 years ago by vdauwera ★ 1.2k
2
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1
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9.1k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
updated 4.1 years ago by 39k • written 4.1 years ago by ★ 1.2k
2
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0
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1.0k
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Answer: A: GATK best practices for Broad-produced NGS data
4.5 years ago by vdauwera ★ 1.2k
3
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1
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3.0k
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Answer: A: Bash vs WDL for running GATK
updated 4.5 years ago by 129k • written 4.5 years ago by ★ 1.2k
3
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1
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3.7k
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Answer: A: Can someone please help me run any GATK4 pipeline?
5.0 years ago by vdauwera ★ 1.2k
4
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1
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2.7k
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Answer: A: GATK4 local computing workflow
5.1 years ago by vdauwera ★ 1.2k
3
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1
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4.0k
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Answer: A: Strategy in WGS variant calling using GATK (CombineGVCF step)
5.1 years ago by vdauwera ★ 1.2k
0
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0
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1.1k
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Comment: A: InDel marker using GATK and Mummer
5.2 years ago by vdauwera ★ 1.2k
6
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1
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8.0k
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Answer: A: Variant Calls: Freebayes vs GATK
5.2 years ago by vdauwera ★ 1.2k
2
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0
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3.0k
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Answer: A: GATK4 training for beginners
5.2 years ago by vdauwera ★ 1.2k
3
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0
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9.0k
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Answer: A: Realignment disappeared in gatk4
5.2 years ago by vdauwera ★ 1.2k
2
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0
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7.2k
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Comment: C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
5.2 years ago by vdauwera ★ 1.2k
3
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0
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1.7k
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News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 18 days ago by 39k • written 5.5 years ago by ★ 1.2k
1
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0
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1.3k
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News: Free credits for running GATK4 pipelines in the cloud
GATK4 GATK cloud
updated 8 weeks ago by 39k • written 5.5 years ago by ★ 1.2k
1
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0
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1.7k
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Comment: C: Are you using GATK ?
5.5 years ago by vdauwera ★ 1.2k
0
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1
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1.7k
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Comment: C: Are you using GATK ?
5.6 years ago by vdauwera ★ 1.2k
0
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1
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1.7k
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Comment: C: Are you using GATK ?
5.6 years ago by vdauwera ★ 1.2k
0
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0
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1.2k
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Comment: C: GATK returns to a fully open-source license
6.0 years ago by vdauwera ★ 1.2k
2
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0
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4.0k
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Answer: A: Open Source Compliant Diploid Variant Caller comparable to GATK Haplotype Caller
6.0 years ago by vdauwera ★ 1.2k
1
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0
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7.7k
views
Answer: A: What Are The Open Source Alternatives To Gatk?
6.0 years ago by vdauwera ★ 1.2k
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