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446
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Answer: Answer: Help finding GTEx v8 Imputed Genotypes
6 months ago by vdauwera ★ 1.2k
0
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0
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822
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Answer: Answer: Cloud Computing Services available?
6 months ago by vdauwera ★ 1.2k
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0
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400
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Comment: Comment: Long variant splits to several variants by variant callers
8 months ago by vdauwera ★ 1.2k
1
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0
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840
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Answer: Answer: GATK command for mutect2
13 months ago by vdauwera ★ 1.2k
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0
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1.4k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
13 months ago by vdauwera ★ 1.2k
1
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1
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1.4k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
13 months ago by vdauwera ★ 1.2k
3
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2
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1.4k
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Answer: Answer: Why GATK4 doesn't carry out local realignment around indels ?
13 months ago by vdauwera ★ 1.2k
1
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1
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675
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Answer: Answer: ApplyBQSR won't recognise output argument
15 months ago by vdauwera ★ 1.2k
2
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1
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1.9k
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Answer: Answer: Can anyone share me a good GATK4 workflow
15 months ago by vdauwera ★ 1.2k
0
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1
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960
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Comment: Comment: Strange speed up in GATK LeftAlignIndels
16 months ago by vdauwera ★ 1.2k
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0
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1.3k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
17 months ago by vdauwera ★ 1.2k
0
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1
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1.3k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
17 months ago by vdauwera ★ 1.2k
1
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0
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796
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Comment: Comment: GATK snap calling - combine exome and WGS?
17 months ago by vdauwera ★ 1.2k
0
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0
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671
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Comment: Comment: Genotyping low read depth sequences using GATK
17 months ago by vdauwera ★ 1.2k
0
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1
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671
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Answer: Answer: Genotyping low read depth sequences using GATK
17 months ago by vdauwera ★ 1.2k
2
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1
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796
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Answer: Answer: GATK snap calling - combine exome and WGS?
17 months ago by vdauwera ★ 1.2k
1
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0
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578
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Answer: Answer: Adding read groups to mark duplicated bam file
17 months ago by vdauwera ★ 1.2k
0
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0
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425
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Answer: Answer: GATK call arm level chromosome copy number variations (cnv)
17 months ago by vdauwera ★ 1.2k
2
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0
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1.2k
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Answer: Answer: GATK : VariantRecalibrator no positional argument is defined for this tool.
17 months ago by vdauwera ★ 1.2k
1
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0
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538
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Comment: Comment: How to give multiple input files to the gatk ?
17 months ago by vdauwera ★ 1.2k
1
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0
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2.0k
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Comment: Comment: Input arguments for AddOrReplaceReadGroups (Picard) from fastq
19 months ago by vdauwera ★ 1.2k
0
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0
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1.8k
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Comment: Comment: Problems running gatk - gatk: command not found
19 months ago by vdauwera ★ 1.2k
0
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0
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1.0k
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Comment: C: GATK read groups for instruments from BGI Tech like BGISEQ-500?
2.1 years ago by vdauwera ★ 1.2k
2
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1
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1.0k
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Answer: A: GATK read groups for instruments from BGI Tech like BGISEQ-500?
2.1 years ago by vdauwera ★ 1.2k
1
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0
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758
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Tool: Introducing WARP: A collection of cloud-optimized workflows for biological data processing and analysis
genomics single-cell epigenomics workflows wdl Tool
2.3 years ago by vdauwera ★ 1.2k
0
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1
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1.3k
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Answer: A: How do you get input files to a cromwell server
2.8 years ago by vdauwera ★ 1.2k
0
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1
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3.7k
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Comment: C: Scientific Technical Writer -- Help us write papers about GATK!
updated 3.1 years ago by 38k • written 8.8 years ago by ★ 1.2k
2
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0
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988
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Job: Scientific writer for GATK at Broad Institute Data Sciences Platform
gatk Job
3.5 years ago by vdauwera ★ 1.2k
1
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1
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8.8k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
3.6 years ago by vdauwera ★ 1.2k
0
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0
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5.5k
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Comment: C: GATK Workflow for GATK in Cancer Samples
3.6 years ago by vdauwera ★ 1.2k
1
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1
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8.8k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
3.6 years ago by vdauwera ★ 1.2k
2
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1
reply
8.8k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
updated 3.8 years ago by 38k • written 3.8 years ago by ★ 1.2k
2
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0
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991
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Answer: A: GATK best practices for Broad-produced NGS data
4.2 years ago by vdauwera ★ 1.2k
3
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1
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2.9k
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Answer: A: Bash vs WDL for running GATK
updated 4.2 years ago by 125k • written 4.2 years ago by ★ 1.2k
3
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1
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3.5k
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Answer: A: Can someone please help me run any GATK4 pipeline?
4.7 years ago by vdauwera ★ 1.2k
4
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1
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2.6k
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Answer: A: GATK4 local computing workflow
4.8 years ago by vdauwera ★ 1.2k
3
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1
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3.9k
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Answer: A: Strategy in WGS variant calling using GATK (CombineGVCF step)
4.8 years ago by vdauwera ★ 1.2k
0
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0
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1.1k
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Comment: A: InDel marker using GATK and Mummer
4.9 years ago by vdauwera ★ 1.2k
6
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1
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7.5k
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Answer: A: Variant Calls: Freebayes vs GATK
4.9 years ago by vdauwera ★ 1.2k
2
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0
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2.9k
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Answer: A: GATK4 training for beginners
4.9 years ago by vdauwera ★ 1.2k
3
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0
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8.7k
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Answer: A: Realignment disappeared in gatk4
4.9 years ago by vdauwera ★ 1.2k
2
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0
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7.0k
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Comment: C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
4.9 years ago by vdauwera ★ 1.2k
3
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0
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1.7k
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News: Deep learning in GATK4
GATK4 GATK deep learning News
5.1 years ago by vdauwera ★ 1.2k
1
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0
replies
1.2k
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News: Free credits for running GATK4 pipelines in the cloud
GATK GATK4 cloud News
5.1 years ago by vdauwera ★ 1.2k
1
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0
replies
1.6k
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Comment: C: Are you using GATK ?
5.1 years ago by vdauwera ★ 1.2k
0
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1
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1.6k
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Comment: C: Are you using GATK ?
5.3 years ago by vdauwera ★ 1.2k
0
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1
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1.6k
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Comment: C: Are you using GATK ?
5.3 years ago by vdauwera ★ 1.2k
0
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0
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1.1k
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Comment: C: GATK returns to a fully open-source license
5.7 years ago by vdauwera ★ 1.2k
2
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0
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3.9k
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Answer: A: Open Source Compliant Diploid Variant Caller comparable to GATK Haplotype Caller
5.7 years ago by vdauwera ★ 1.2k
1
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0
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7.4k
views
Answer: A: What Are The Open Source Alternatives To Gatk?
5.7 years ago by vdauwera ★ 1.2k
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