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Answer: Answer: Help finding GTEx v8 Imputed Genotypes
2.2 years ago by vdauwera ★ 1.2k
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1.6k
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Answer: Answer: Cloud Computing Services available?
2.2 years ago by vdauwera ★ 1.2k
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0
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838
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Comment: Comment: Long variant splits to several variants by variant callers
2.4 years ago by vdauwera ★ 1.2k
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1.4k
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Answer: Answer: GATK command for mutect2
2.8 years ago by vdauwera ★ 1.2k
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0
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4.4k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
2.8 years ago by vdauwera ★ 1.2k
1
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1
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4.4k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
2.8 years ago by vdauwera ★ 1.2k
4
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2
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4.4k
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Answer: Answer: Why GATK4 doesn't carry out local realignment around indels ?
2.8 years ago by vdauwera ★ 1.2k
1
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1
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1.4k
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Answer: Answer: ApplyBQSR won't recognise output argument
2.9 years ago by vdauwera ★ 1.2k
2
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1
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3.7k
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Answer: Answer: Can anyone share me a good GATK4 workflow
3.0 years ago by vdauwera ★ 1.2k
0
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1
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1.6k
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Comment: Comment: Strange speed up in GATK LeftAlignIndels
3.0 years ago by vdauwera ★ 1.2k
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0
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2.3k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
3.1 years ago by vdauwera ★ 1.2k
0
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1
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2.3k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
3.1 years ago by vdauwera ★ 1.2k
1
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0
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1.2k
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Comment: Comment: GATK snap calling - combine exome and WGS?
3.1 years ago by vdauwera ★ 1.2k
0
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0
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1.4k
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Comment: Comment: Genotyping low read depth sequences using GATK
3.1 years ago by vdauwera ★ 1.2k
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1
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1.4k
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Answer: Answer: Genotyping low read depth sequences using GATK
3.1 years ago by vdauwera ★ 1.2k
2
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1
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1.2k
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Answer: Answer: GATK snap calling - combine exome and WGS?
3.1 years ago by vdauwera ★ 1.2k
1
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0
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1.3k
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Answer: Answer: Adding read groups to mark duplicated bam file
3.1 years ago by vdauwera ★ 1.2k
0
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0
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748
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Answer: Answer: GATK call arm level chromosome copy number variations (cnv)
3.1 years ago by vdauwera ★ 1.2k
2
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0
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2.4k
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Answer: Answer: GATK : VariantRecalibrator no positional argument is defined for this tool.
3.1 years ago by vdauwera ★ 1.2k
1
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0
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1.1k
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Comment: Comment: How to give multiple input files to the gatk ?
3.1 years ago by vdauwera ★ 1.2k
2
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0
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4.1k
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Comment: Comment: Input arguments for AddOrReplaceReadGroups (Picard) from fastq
3.2 years ago by vdauwera ★ 1.2k
0
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0
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3.2k
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Comment: Comment: Problems running gatk - gatk: command not found
3.3 years ago by vdauwera ★ 1.2k
0
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0
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1.8k
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Comment: C: GATK read groups for instruments from BGI Tech like BGISEQ-500?
3.8 years ago by vdauwera ★ 1.2k
2
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1
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1.8k
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Answer: A: GATK read groups for instruments from BGI Tech like BGISEQ-500?
3.8 years ago by vdauwera ★ 1.2k
1
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0
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1.0k
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Tool: Introducing WARP: A collection of cloud-optimized workflows for biological data processing and analysis
wdl workflows genomics epigenomics single-cell
updated 15 months ago by 44k • written 4.0 years ago by ★ 1.2k
0
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1
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1.9k
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Answer: A: How do you get input files to a cromwell server
4.4 years ago by vdauwera ★ 1.2k
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1
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4.4k
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Comment: C: Scientific Technical Writer -- Help us write papers about GATK!
updated 4.8 years ago by 44k • written 10.5 years ago by ★ 1.2k
2
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0
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1.5k
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Job: Scientific writer for GATK at Broad Institute Data Sciences Platform
gatk
updated 16 months ago by 44k • written 5.2 years ago by ★ 1.2k
1
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1
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11k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
5.3 years ago by vdauwera ★ 1.2k
0
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0
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6.2k
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Comment: C: GATK Workflow for GATK in Cancer Samples
5.3 years ago by vdauwera ★ 1.2k
1
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1
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11k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
5.3 years ago by vdauwera ★ 1.2k
2
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1
reply
11k
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Comment: C: How Much Does It Cost To Align A Flowcell In The Cloud?
updated 5.4 years ago by 44k • written 5.4 years ago by ★ 1.2k
2
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0
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1.5k
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Answer: A: GATK best practices for Broad-produced NGS data
5.8 years ago by vdauwera ★ 1.2k
3
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1
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3.8k
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Answer: A: Bash vs WDL for running GATK
updated 5.8 years ago by 146k • written 5.8 years ago by ★ 1.2k
3
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1
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4.6k
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Answer: A: Can someone please help me run any GATK4 pipeline?
6.4 years ago by vdauwera ★ 1.2k
4
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1
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3.0k
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Answer: A: GATK4 local computing workflow
6.4 years ago by vdauwera ★ 1.2k
3
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1
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5.2k
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Answer: A: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.5 years ago by vdauwera ★ 1.2k
0
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0
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1.4k
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Comment: A: InDel marker using GATK and Mummer
6.5 years ago by vdauwera ★ 1.2k
6
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1
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9.9k
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Answer: A: Variant Calls: Freebayes vs GATK
6.5 years ago by vdauwera ★ 1.2k
2
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0
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3.3k
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Answer: A: GATK4 training for beginners
6.5 years ago by vdauwera ★ 1.2k
3
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0
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10k
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Answer: A: Realignment disappeared in gatk4
6.5 years ago by vdauwera ★ 1.2k
2
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0
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8.0k
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Comment: C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
6.6 years ago by vdauwera ★ 1.2k
3
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0
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1.9k
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News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 16 months ago by 44k • written 6.8 years ago by ★ 1.2k
1
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0
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1.5k
views
News: Free credits for running GATK4 pipelines in the cloud
GATK4 GATK cloud
updated 18 months ago by 44k • written 6.8 years ago by ★ 1.2k
1
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0
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2.1k
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Comment: C: Are you using GATK ?
6.8 years ago by vdauwera ★ 1.2k
0
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1
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2.1k
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Comment: C: Are you using GATK ?
6.9 years ago by vdauwera ★ 1.2k
0
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1
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2.1k
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Comment: C: Are you using GATK ?
6.9 years ago by vdauwera ★ 1.2k
0
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0
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1.4k
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Comment: C: GATK returns to a fully open-source license
7.4 years ago by vdauwera ★ 1.2k
2
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0
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4.8k
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Answer: A: Open Source Compliant Diploid Variant Caller comparable to GATK Haplotype Caller
7.4 years ago by vdauwera ★ 1.2k
2
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0
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9.0k
views
Answer: A: What Are The Open Source Alternatives To Gatk?
7.4 years ago by vdauwera ★ 1.2k
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