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Answer: Answer: Help finding GTEx v8 Imputed Genotypes
2.7 years ago by vdauwera ★ 1.2k
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0
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1.9k
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Answer: Answer: Cloud Computing Services available?
2.7 years ago by vdauwera ★ 1.2k
1
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0
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1.6k
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Answer: Answer: GATK command for mutect2
3.3 years ago by vdauwera ★ 1.2k
4
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2
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5.6k
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Answer: Answer: Why GATK4 doesn't carry out local realignment around indels ?
3.4 years ago by vdauwera ★ 1.2k
1
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1
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1.7k
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Answer: Answer: ApplyBQSR won't recognise output argument
3.5 years ago by vdauwera ★ 1.2k
2
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1
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4.3k
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Answer: Answer: Can anyone share me a good GATK4 workflow
3.5 years ago by vdauwera ★ 1.2k
0
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1
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1.8k
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Answer: Answer: Genotyping low read depth sequences using GATK
3.6 years ago by vdauwera ★ 1.2k
2
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1
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1.4k
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Answer: Answer: GATK snap calling - combine exome and WGS?
3.6 years ago by vdauwera ★ 1.2k
1
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0
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1.6k
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Answer: Answer: Adding read groups to mark duplicated bam file
3.6 years ago by vdauwera ★ 1.2k
0
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0
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845
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Answer: Answer: GATK call arm level chromosome copy number variations (cnv)
3.7 years ago by vdauwera ★ 1.2k
2
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0
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2.7k
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Answer: Answer: GATK : VariantRecalibrator no positional argument is defined for this tool.
3.7 years ago by vdauwera ★ 1.2k
2
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1
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2.1k
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Answer: A: GATK read groups for instruments from BGI Tech like BGISEQ-500?
4.3 years ago by vdauwera ★ 1.2k
0
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1
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2.1k
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Answer: A: How do you get input files to a cromwell server
5.0 years ago by vdauwera ★ 1.2k
2
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0
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1.7k
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Answer: A: GATK best practices for Broad-produced NGS data
6.4 years ago by vdauwera ★ 1.2k
3
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1
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4.0k
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Answer: A: Bash vs WDL for running GATK
updated 6.4 years ago by 150k • written 6.4 years ago by ★ 1.2k
3
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1
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5.0k
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Answer: A: Can someone please help me run any GATK4 pipeline?
6.9 years ago by vdauwera ★ 1.2k
4
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1
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3.1k
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Answer: A: GATK4 local computing workflow
7.0 years ago by vdauwera ★ 1.2k
3
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1
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5.8k
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Answer: A: Strategy in WGS variant calling using GATK (CombineGVCF step)
7.0 years ago by vdauwera ★ 1.2k
7
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1
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11k
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Answer: A: Variant Calls: Freebayes vs GATK
7.1 years ago by vdauwera ★ 1.2k
2
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0
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3.5k
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Answer: A: GATK4 training for beginners
7.1 years ago by vdauwera ★ 1.2k
3
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0
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10k
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Answer: A: Realignment disappeared in gatk4
7.1 years ago by vdauwera ★ 1.2k
2
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0
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5.2k
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Answer: A: Open Source Compliant Diploid Variant Caller comparable to GATK Haplotype Caller
7.9 years ago by vdauwera ★ 1.2k
2
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0
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9.6k
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Answer: A: What Are The Open Source Alternatives To Gatk?
7.9 years ago by vdauwera ★ 1.2k
5
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1
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13k
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Answer: Answer: What is a bad GATK Genotype Quality?
updated 2.4 years ago by 45k • written 9.8 years ago by ★ 1.2k
6
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3
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6.5k
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Answer: Answer: GATK Workflow for GATK in Cancer Samples
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 1.2k
1
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1
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4.3k
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Answer: A: Dissecting number of forward/reverse reads from GATK output
10.8 years ago by vdauwera ★ 1.2k
1
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0
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3.7k
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Answer: A: Snp Calling Error By Gatk Unifiedgenotyper Program
11.5 years ago by vdauwera ★ 1.2k
1
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0
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3.1k
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Answer: A: Gatk Ouput : Duplication On Same Position
11.6 years ago by vdauwera ★ 1.2k
1
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0
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3.0k
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Answer: A: Does Anybody Know Which Gatk Walkers Are Positively Affected By Pedigree Informa
12.0 years ago by vdauwera ★ 1.2k
1
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1
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4.2k
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Answer: A: Gatk-2.3-9 And Input File Format
12.2 years ago by vdauwera ★ 1.2k
2
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1
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9.8k
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Answer: A: Problems With Chromosome Ordering When Running The Gatk Indelrealigner
12.2 years ago by vdauwera ★ 1.2k
1
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2
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9.6k
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Answer: A: What Are The Open Source Alternatives To Gatk?
12.2 years ago by vdauwera ★ 1.2k
2
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0
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7.8k
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Answer: A: Running Gatk Baserecalibrator
12.5 years ago by vdauwera ★ 1.2k
2
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0
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7.2k
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Answer: A: Bwa And Gatk Runtimes
12.5 years ago by vdauwera ★ 1.2k
2
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1
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4.1k
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Answer: A: Data_Type_Specific_Filters For Gatk Variantfiltration?
12.5 years ago by vdauwera ★ 1.2k
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