Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
0
replies
488
views
Answer: Answer: Help finding GTEx v8 Imputed Genotypes
7 months ago by vdauwera ★ 1.2k
0
votes
0
replies
904
views
Answer: Answer: Cloud Computing Services available?
7 months ago by vdauwera ★ 1.2k
1
vote
0
replies
869
views
Answer: Answer: GATK command for mutect2
15 months ago by vdauwera ★ 1.2k
3
votes
2
replies
1.6k
views
Answer: Answer: Why GATK4 doesn't carry out local realignment around indels ?
15 months ago by vdauwera ★ 1.2k
1
vote
1
reply
724
views
Answer: Answer: ApplyBQSR won't recognise output argument
16 months ago by vdauwera ★ 1.2k
2
votes
1
reply
2.1k
views
Answer: Answer: Can anyone share me a good GATK4 workflow
17 months ago by vdauwera ★ 1.2k
0
votes
1
reply
705
views
Answer: Answer: Genotyping low read depth sequences using GATK
19 months ago by vdauwera ★ 1.2k
2
votes
1
reply
821
views
Answer: Answer: GATK snap calling - combine exome and WGS?
19 months ago by vdauwera ★ 1.2k
1
vote
0
replies
627
views
Answer: Answer: Adding read groups to mark duplicated bam file
19 months ago by vdauwera ★ 1.2k
0
votes
0
replies
467
views
Answer: Answer: GATK call arm level chromosome copy number variations (cnv)
19 months ago by vdauwera ★ 1.2k
2
votes
0
replies
1.4k
views
Answer: Answer: GATK : VariantRecalibrator no positional argument is defined for this tool.
19 months ago by vdauwera ★ 1.2k
2
votes
1
reply
1.1k
views
Answer: A: GATK read groups for instruments from BGI Tech like BGISEQ-500?
2.2 years ago by vdauwera ★ 1.2k
0
votes
1
reply
1.4k
views
Answer: A: How do you get input files to a cromwell server
2.9 years ago by vdauwera ★ 1.2k
2
votes
0
replies
1.0k
views
Answer: A: GATK best practices for Broad-produced NGS data
4.3 years ago by vdauwera ★ 1.2k
3
votes
1
reply
2.9k
views
Answer: A: Bash vs WDL for running GATK
updated 4.3 years ago by 127k • written 4.3 years ago by ★ 1.2k
3
votes
1
reply
3.6k
views
Answer: A: Can someone please help me run any GATK4 pipeline?
4.8 years ago by vdauwera ★ 1.2k
4
votes
1
reply
2.6k
views
Answer: A: GATK4 local computing workflow
4.9 years ago by vdauwera ★ 1.2k
3
votes
1
reply
3.9k
views
Answer: A: Strategy in WGS variant calling using GATK (CombineGVCF step)
4.9 years ago by vdauwera ★ 1.2k
6
votes
1
reply
7.7k
views
Answer: A: Variant Calls: Freebayes vs GATK
5.0 years ago by vdauwera ★ 1.2k
2
votes
0
replies
2.9k
views
Answer: A: GATK4 training for beginners
5.0 years ago by vdauwera ★ 1.2k
3
votes
0
replies
8.9k
views
Answer: A: Realignment disappeared in gatk4
5.0 years ago by vdauwera ★ 1.2k
2
votes
0
replies
4.0k
views
Answer: A: Open Source Compliant Diploid Variant Caller comparable to GATK Haplotype Caller
5.8 years ago by vdauwera ★ 1.2k
1
vote
0
replies
7.5k
views
Answer: A: What Are The Open Source Alternatives To Gatk?
5.8 years ago by vdauwera ★ 1.2k
5
votes
1
reply
11k
views
Answer: Answer: What is a bad GATK Genotype Quality?
updated 3 months ago by 38k • written 7.8 years ago by ★ 1.2k
6
votes
3
replies
5.6k
views
Answer: Answer: GATK Workflow for GATK in Cancer Samples
updated 3 months ago by 38k • written 7.8 years ago by ★ 1.2k
1
vote
1
reply
3.6k
views
Answer: A: Dissecting number of forward/reverse reads from GATK output
8.7 years ago by vdauwera ★ 1.2k
1
vote
0
replies
3.2k
views
Answer: A: Snp Calling Error By Gatk Unifiedgenotyper Program
9.4 years ago by vdauwera ★ 1.2k
1
vote
0
replies
2.6k
views
Answer: A: Gatk Ouput : Duplication On Same Position
9.5 years ago by vdauwera ★ 1.2k
1
vote
0
replies
2.7k
views
Answer: A: Does Anybody Know Which Gatk Walkers Are Positively Affected By Pedigree Informa
9.9 years ago by vdauwera ★ 1.2k
1
vote
1
reply
3.7k
views
Answer: A: Gatk-2.3-9 And Input File Format
10.1 years ago by vdauwera ★ 1.2k
2
votes
1
reply
9.0k
views
Answer: A: Problems With Chromosome Ordering When Running The Gatk Indelrealigner
10.1 years ago by vdauwera ★ 1.2k
1
vote
2
replies
7.5k
views
Answer: A: What Are The Open Source Alternatives To Gatk?
10.1 years ago by vdauwera ★ 1.2k
2
votes
0
replies
7.2k
views
Answer: A: Running Gatk Baserecalibrator
10.4 years ago by vdauwera ★ 1.2k
2
votes
0
replies
6.3k
views
Answer: A: Bwa And Gatk Runtimes
10.4 years ago by vdauwera ★ 1.2k
2
votes
1
reply
3.5k
views
Answer: A: Data_Type_Specific_Filters For Gatk Variantfiltration?
10.4 years ago by vdauwera ★ 1.2k
35 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6