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490
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Answer: Answer: Is comparing seeds sufficient, or should alignments be compared instead?
3 months ago by shenwei356 8.7k
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1
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960
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Comment: Comment: Metagenomics/amplicon sequencing: Most publicly available data already host remo
6 months ago by shenwei356 8.7k
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0
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1.1k
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
9 months ago by shenwei356 8.7k
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0
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1.1k
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
9 months ago by shenwei356 8.7k
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0
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772
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Comment: Comment: Question about seqkit sort function
9 months ago by shenwei356 8.7k
1
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0
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1.1k
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Comment: Comment: Is there an elegant way to deal with the version indicator in reference FASTA fi
10 months ago by shenwei356 8.7k
2
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1
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1.1k
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Comment: Comment: Is there an elegant way to deal with the version indicator in reference FASTA fi
10 months ago by shenwei356 8.7k
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0
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754
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Comment: Comment: Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
11 months ago by shenwei356 8.7k
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0
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838
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Comment: Comment: how to order paired-end reads to use in kaiju?
12 months ago by shenwei356 8.7k
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1
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1.3k
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Comment: Comment: Remote BLASTx : Strain specific search.
12 months ago by shenwei356 8.7k
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1
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1.2k
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Comment: Comment: Nr Database just for Prokaryotes
12 months ago by shenwei356 8.7k
2
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1.1k
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Answer: Answer: Rapid K-mer search
12 months ago by shenwei356 8.7k
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0
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1.8k
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Comment: Comment: How to check if all read names are paired properly in paired end fastq.gz files?
13 months ago by shenwei356 8.7k
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0
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957
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Comment: Comment: Empty txt file as an output of "seqkit stats" for multiple fastq files
15 months ago by shenwei356 8.7k
1
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0
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12k
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Comment: Comment: how to split multi-fasta file into single fasta file named by header
15 months ago by shenwei356 8.7k
1
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0
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1.1k
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Comment: Comment: Construction of a phylogentic tree for thousands of bacterial genomes
15 months ago by shenwei356 8.7k
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1
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1.2k
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Comment: Comment: assemble extracted kmers into longer contigs/sequences
15 months ago by shenwei356 8.7k
2
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1
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1.2k
views
Answer: Answer: assemble extracted kmers into longer contigs/sequences
15 months ago by shenwei356 8.7k
1
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0
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1.0k
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Comment: Comment: Publish a Letter in higher impact vs Research article in lower impact
16 months ago by shenwei356 8.7k
3
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1
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3.1k
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Answer: Answer: Bacterial plasmid analysis
16 months ago by shenwei356 8.7k
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0
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1.8k
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Comment: Comment: Rename multiple fastq.gz files
17 months ago by shenwei356 8.7k
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0
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2.4k
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
17 months ago by shenwei356 8.7k
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2
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2.4k
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
17 months ago by shenwei356 8.7k
0
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0
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1.3k
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Comment: Comment: Parsing fasta file by coordinates
18 months ago by shenwei356 8.7k
1
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1
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1.3k
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Comment: Comment: Seqkit Replace
18 months ago by shenwei356 8.7k
2
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1
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1.3k
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Answer: Answer: Seqkit Replace
18 months ago by shenwei356 8.7k
2
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1
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1.9k
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Comment: Comment: Max lenght reads from fastq
18 months ago by shenwei356 8.7k
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0
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616
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Comment: Comment: Conda appears different than yesterday
19 months ago by shenwei356 8.7k
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0
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1.7k
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Comment: Comment: Blastn for all bacteria genomes; create the db
19 months ago by shenwei356 8.7k
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1
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1.7k
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Answer: Answer: Blastn for all bacteria genomes; create the db
19 months ago by shenwei356 8.7k
7
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5
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5.9k
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How to get consensus FASTA sequence from GFA assembly graph?
gfa consensus
updated 20 months ago by ▴ 40 • written 6.8 years ago by 8.7k
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0
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581
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Comment: Comment: Calculating percentage of reads mapped to a reference genome
20 months ago by shenwei356 8.7k
3
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1
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2.1k
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Answer: Answer: Renaming fasta files with their headers
21 months ago by shenwei356 8.7k
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1
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1.6k
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Comment: Comment: Species coverage in the NCBI protein NR database ?
21 months ago by shenwei356 8.7k
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0
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1.6k
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Comment: Comment: Species coverage in the NCBI protein NR database ?
21 months ago by shenwei356 8.7k
5
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0
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1.6k
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Answer: Answer: how to sort fasta file accroding to header
22 months ago by shenwei356 8.7k
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1
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3.8k
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Comment: Comment: How to limit fasta header to 40 characters?
2.0 years ago by shenwei356 8.7k
13
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6
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7.1k
views
Tool: csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
CSV Golang TSV
2.1 years ago by shenwei356 8.7k
1
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0
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7.1k
views
Answer: Answer: csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
2.1 years ago by shenwei356 8.7k
0
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0
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28k
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Comment: Comment: searching reads with a certain sequence in fastq file
2.2 years ago by shenwei356 8.7k
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1
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1.1k
views
Answer: Answer: Question about sequence alignment
2.2 years ago by shenwei356 8.7k
3
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0
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1.7k
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Answer: Answer: How to extract sequences from multiple fastq files based on a certain sequence
2.2 years ago by shenwei356 8.7k
2
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0
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2.0k
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Answer: Answer: Bash solution to replace part of FASTA headers witch contain matching values in
2.2 years ago by shenwei356 8.7k
1
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0
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4.9k
views
Answer: Answer: Getting sequences from fastq file using Grep command
2.3 years ago by shenwei356 8.7k
2
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0
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1.4k
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Answer: Answer: how to sort unique seq from fasta files
2.3 years ago by shenwei356 8.7k
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1
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19k
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Comment: Comment: How to concatenate multiple fasta file
2.3 years ago by shenwei356 8.7k
2
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1
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2.6k
views
Comment: Comment: how to use nohup with parallel
2.3 years ago by shenwei356 8.7k
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1
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2.1k
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Answer: Answer: Add a genome to a kraken library
2.3 years ago by shenwei356 8.7k
2
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0
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928
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Answer: Answer: Randomly reduce size of reads but preserving the distribution
2.4 years ago by shenwei356 8.7k
4
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1
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4.0k
views
Answer: Answer: Compare two very close genomes (.fasta)
2.4 years ago by shenwei356 8.7k
780 results • Page 1 of 16
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