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20
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17
replies
24k
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13 follow
How To Efficiently Sort A Fastq File By Entry Id?
fastq illumina sort next-gen-sequencing alignment
updated 22 months ago by 45k • written 13.9 years ago by ▴ 840
50
votes
17
replies
42k
views
17 follow
How To Get Number Of Reads In Bam File Efficiently In Python?
python samtools next-gen sequencing
updated 3.0 years ago by 45k • written 15.3 years ago by ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
updated 5.9 years ago by 45k • written 13.9 years ago by ▴ 840
0
votes
1
reply
4.1k
views
Repeatmasker Crashes Before End Of Run With "Can'T Fork..."
repeats repeatmasker blast makeblastdb alignment
updated 6.6 years ago by 20 • written 13.9 years ago by ▴ 840
9
votes
1
reply
3.9k
views
Pysam Parses Certain Read Pairs Out Of Order?
sam samtools next-gen sequencing python
updated 7.1 years ago by 45k • written 15.3 years ago by ▴ 840
20
votes
5
replies
12k
views
Going From Cigar String In Sam To Genomic Coordinates?
sam parsing cigar alignment
updated 7.1 years ago by 45k • written 15.3 years ago by ▴ 840
13
votes
5
replies
9.5k
views
Getting Genomic Sequences And Phastcons Scores Using Python From Ensembl/Ucsc?
python biopython ucsc ensembl sequence
updated 7.1 years ago by 45k • written 15.3 years ago by ▴ 840
19
votes
18
replies
28k
views
7 follow
Efficiently Iterating Over Fastq Records From Python
python fasta fastq biopython next-gen sequencing
updated 7.3 years ago by ▴ 490 • written 13.9 years ago by ▴ 840
6
votes
2
replies
2.8k
views
Coordinates Of Ucsc Table Tracks?
ucsc genome sequence genome
updated 7.5 years ago by 20 • written 14.6 years ago by ▴ 840
9
votes
8
replies
9.2k
views
Filtering Stream Bam Output Idealy From Pysam/Python
samtools bam python
updated 3.3 years ago by 45k • written 13.9 years ago by ▴ 840
9
votes
6
replies
5.2k
views
Retrieving Gene Expression Profiles For A Set Of Genes From All Tissues?
microarray geo next-gen sequencing gene
updated 10.8 years ago by • 0 • written 14.7 years ago by ▴ 840
0
votes
0
replies
6.3k
views
Comment: C: Best Way To Visualize Linkage And Genetic Map Between Pairs Of Genes?
13.8 years ago by User 9996 ▴ 840
0
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0
replies
6.3k
views
Comment: C: Best Way To Visualize Linkage And Genetic Map Between Pairs Of Genes?
13.8 years ago by User 9996 ▴ 840
0
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0
replies
6.3k
views
Comment: C: Best Way To Visualize Linkage And Genetic Map Between Pairs Of Genes?
13.8 years ago by User 9996 ▴ 840
0
votes
0
replies
6.3k
views
Comment: C: Best Way To Visualize Linkage And Genetic Map Between Pairs Of Genes?
13.8 years ago by User 9996 ▴ 840
0
votes
0
replies
6.3k
views
Comment: C: Best Way To Visualize Linkage And Genetic Map Between Pairs Of Genes?
13.8 years ago by User 9996 ▴ 840
4
votes
9
replies
6.3k
views
Best Way To Visualize Linkage And Genetic Map Between Pairs Of Genes?
mapping genome linkage genetics
updated 13.8 years ago by 11k • written 13.8 years ago by ▴ 840
1
vote
0
replies
9.2k
views
Comment: C: Filtering Stream Bam Output Idealy From Pysam/Python
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
9.2k
views
Comment: C: Filtering Stream Bam Output Idealy From Pysam/Python
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
2.9k
views
Comment: C: Scoring Repetitive Sequences
13.9 years ago by User 9996 ▴ 840
21
votes
2
replies
19k
views
Truncating Bam Files With Samtools
samtools sam next-gen sequencing sequence
updated 13.9 years ago by ★ 2.7k • written 13.9 years ago by ▴ 840
6
votes
3
replies
2.9k
views
Scoring Repetitive Sequences
genome sequence sequence repeats repeatmasker
updated 13.9 years ago by 27k • written 13.9 years ago by ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
1
reply
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
2
votes
0
replies
24k
views
Comment: C: How To Efficiently Sort A Fastq File By Entry Id?
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
1
vote
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
1
vote
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
0
votes
0
replies
25k
views
Comment: C: Getting Unmapped Reads: Comparing Fastq To Bam
13.9 years ago by User 9996 ▴ 840
32
votes
51
replies
25k
views
8 follow
Getting Unmapped Reads: Comparing Fastq To Bam
fastq samtools bedtools bam
updated 13.9 years ago by 24k • written 13.9 years ago by ▴ 840
0
votes
0
replies
8.3k
views
Comment: C: Finding Reference Sequences And Interpretation Of Data From Repeatmasker Ucsc Ta
13.9 years ago by User 9996 ▴ 840
20
votes
6
replies
8.3k
views
Finding Reference Sequences And Interpretation Of Data From Repeatmasker Ucsc Tables
repeatmasker ucsc ucsc browser repeats
updated 3.4 years ago by 45k • written 13.9 years ago by ▴ 840
7
votes
7
replies
8.8k
views
Reporting The Bam Reads Overlapping A Set Of Intervals With Bedtools
bedtools bam next-gen sequencing bed
updated 14.0 years ago by 36k • written 14.0 years ago by ▴ 840
0
votes
0
replies
6.2k
views
Comment: C: Counting Number Of Bam Reads Directly Within Set Of Intervals With Bedtools
14.1 years ago by User 9996 ▴ 840
0
votes
0
replies
6.2k
views
Comment: C: Counting Number Of Bam Reads Directly Within Set Of Intervals With Bedtools
14.2 years ago by User 9996 ▴ 840
62 results • Page 1 of 2
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