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3
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Ortholog clusters in Bacteria
orthologs gene family bacteria GtDB
updated 3.7 years ago by ★ 30k • written 3.7 years ago by 11k
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Comment: Comment: Can ETE3 list all bacterial species present in NCBI Taxonomy?
3.7 years ago by Andrzej Zielezinski 11k
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Can ETE3 list all bacterial species present in NCBI Taxonomy?
NCBI ETE3 taxonomy
3.7 years ago by Andrzej Zielezinski 11k
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2.2k
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Comment: Comment: proteins global alignment using BLOSUM80
3.9 years ago by Andrzej Zielezinski 11k
2
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1
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2.2k
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Answer: Answer: proteins global alignment using BLOSUM80
3.9 years ago by Andrzej Zielezinski 11k
3
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1
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1.2k
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Any tool to identify HGT events based on gene and species trees?
hgt phylogeny tree
updated 4.1 years ago by 3.9k • written 4.1 years ago by 11k
1
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1
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6.9k
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Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
4.1 years ago by Andrzej Zielezinski 11k
1
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1
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6.9k
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Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
4.1 years ago by Andrzej Zielezinski 11k
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0
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1.4k
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Comment: Comment: How to download all the genome fasta file for plants?
4.1 years ago by Andrzej Zielezinski 11k
0
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1
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6.9k
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Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
4.1 years ago by Andrzej Zielezinski 11k
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0
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2.2k
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Comment: Comment: create protein database for local Blast
4.1 years ago by Andrzej Zielezinski 11k
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1
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5.3k
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Comment: Comment: Sorting and writing multifasta entries to new fasta files
4.2 years ago by Andrzej Zielezinski 11k
4
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1
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5.3k
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Answer: Answer: Sorting and writing multifasta entries to new fasta files
4.2 years ago by Andrzej Zielezinski 11k
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0
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5.3k
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Comment: Comment: Sorting and writing multifasta entries to new fasta files
4.2 years ago by Andrzej Zielezinski 11k
2
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0
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2.6k
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Comment: Comment: Flipping a DNA sequence (not reverse complementing) using command line/samtools?
4.2 years ago by Andrzej Zielezinski 11k
4
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1
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2.6k
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Answer: Answer: Flipping a DNA sequence (not reverse complementing) using command line/samtools?
4.2 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
6.9k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
4.2 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
6.9k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
4.2 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
6.9k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
4.2 years ago by Andrzej Zielezinski 11k
0
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0
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2.8k
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Comment: Comment: How to collapse leaves with the same name in ETE3 tree?
4.3 years ago by Andrzej Zielezinski 11k
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0
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3.2k
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Comment: Comment: How to find the fasta file with maxium number of amino acids?
4.3 years ago by Andrzej Zielezinski 11k
1
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1
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3.2k
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Answer: Answer: How to find the fasta file with maxium number of amino acids?
4.3 years ago by Andrzej Zielezinski 11k
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0
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24k
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Comment: Comment: BLOSUM62 in Python
4.5 years ago by Andrzej Zielezinski 11k
2
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0
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953
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Answer: A: How do I make my code go through all through my list in my file.
4.6 years ago by Andrzej Zielezinski 11k
5
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1
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1.4k
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Answer: C: blastn with short sequences gives no results in the corresponding genome
4.8 years ago by Andrzej Zielezinski 11k
1
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1
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1.3k
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Comment: C: Problem with Bio.SeqIO
4.8 years ago by Andrzej Zielezinski 11k
1
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1
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2.1k
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Comment: C: Get closest taxa of a target species in a phylogeny
4.9 years ago by Andrzej Zielezinski 11k
5
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1
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2.1k
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Answer: A: Get closest taxa of a target species in a phylogeny
4.9 years ago by Andrzej Zielezinski 11k
21
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0
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33k
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Answer: A: Difference between NCBI non-redundant and refseq database
5.0 years ago by Andrzej Zielezinski 11k
3
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0
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1.7k
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Answer: A: Need help with Pairwise Alignment module in iterating over the alignment
5.0 years ago by Andrzej Zielezinski 11k
0
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1
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1.7k
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Comment: C: Need help with Pairwise Alignment module in iterating over the alignment
5.0 years ago by Andrzej Zielezinski 11k
0
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0
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2.0k
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Comment: C: Printing for each specific sequence and its residue in msa , every msa position
5.1 years ago by Andrzej Zielezinski 11k
1
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1
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2.0k
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Answer: A: Printing for each specific sequence and its residue in msa , every msa position
5.1 years ago by Andrzej Zielezinski 11k
0
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1
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2.3k
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Comment: C: How to combine p-values of differentially expressed genes from different timepoi
5.1 years ago by Andrzej Zielezinski 11k
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0
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1.3k
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Comment: C: Calculate Ka/Ks using examples of two sequences.
5.1 years ago by Andrzej Zielezinski 11k
2
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1
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45k
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Answer: A: python 3.8 'No module named pip'
5.3 years ago by Andrzej Zielezinski 11k
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0
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3.8k
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Comment: C: Comparing multiple columns from 2 files using awk, perl or python
5.4 years ago by Andrzej Zielezinski 11k
0
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0
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3.8k
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Comment: C: Comparing multiple columns from 2 files using awk, perl or python
5.4 years ago by Andrzej Zielezinski 11k
2
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0
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3.8k
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Answer: A: Comparing multiple columns from 2 files using awk, perl or python
5.4 years ago by Andrzej Zielezinski 11k
0
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0
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2.9k
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Comment: C: ID query with entrez -- invalid ID - rllib.error.HTTPError: HTTP Error 400: Bad
5.4 years ago by Andrzej Zielezinski 11k
6
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2
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2.9k
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Answer: A: ID query with entrez -- invalid ID - rllib.error.HTTPError: HTTP Error 400: Bad
5.4 years ago by Andrzej Zielezinski 11k
3
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0
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3.3k
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Answer: A: Script to obtain human protein sequences by the gene symbols
5.4 years ago by Andrzej Zielezinski 11k
1
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0
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2.0k
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Answer: C: Makeblastdb refseq viral protein sequence (Blast db v5)
5.4 years ago by Andrzej Zielezinski 11k
1
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0
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2.4k
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Answer: A: Online pipeline for MSA and NJ tree generation bootstrap supported
5.5 years ago by Andrzej Zielezinski 11k
5
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0
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5.0k
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Answer: A: Reverse translate to all possible codons
5.6 years ago by Andrzej Zielezinski 11k
0
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0
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1.6k
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Comment: C: leafs in the MESH tree
5.7 years ago by Andrzej Zielezinski 11k
3
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1
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1.6k
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Answer: A: leafs in the MESH tree
5.7 years ago by Andrzej Zielezinski 11k
4
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0
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3.4k
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Answer: A: Biopython gives ValueError: Sequences must all be the same length even though se
5.7 years ago by Andrzej Zielezinski 11k
2
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1
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5.8k
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Comment: C: kraken and kraken2: Downloading taxonomy tree data...rsync: error while loading
5.7 years ago by Andrzej Zielezinski 11k
4
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1
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3.1k
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Answer: A: Download all bacterial proteins from the same family
updated 5.8 years ago by 45k • written 9.7 years ago by 11k
450 results • Page 2 of 9
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