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questions
0
votes
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replies
580
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From where to get Sub-telomeric Region Coordinates/ sequences for each chromosome
genome
gene
assembly
Assembly
ChIP-Seq
4.4 years ago by
rohitsatyam102
▴ 850
2
votes
1
reply
520
views
Greedy-Non greedy Pattern search
genome
4.5 years ago by
rohitsatyam102
▴ 850
7
votes
7
replies
1.8k
views
Different number of peaks between biological replicates?
sequencing
ChIP-Seq
replicates
updated 4.5 years ago by
colin.kern
★ 1.1k • written 4.5 years ago by
rohitsatyam102
▴ 850
2
votes
3
replies
1.3k
views
MACS2 "total fragments in treatment" gives less number of fragments than expected
ChIP-Seq
next-gen
genome
4.5 years ago by
rohitsatyam102
▴ 850
7
votes
5
replies
4.0k
views
Which one to use for ChipSeq replicate comparison: Spearman or Pearson
ChIP-Seq
correlation
replicates
genome
updated 4.5 years ago by
colin.kern
★ 1.1k • written 4.5 years ago by
rohitsatyam102
▴ 850
1
vote
2
replies
1.5k
views
How to remove Mate mapped to a different chromosome
ChIP-Seq
alignment
samtools
next-gen
updated 13 months ago by
Ram
43k • written 4.5 years ago by
rohitsatyam102
▴ 850
1
vote
3
replies
1.7k
views
MarkDuplicates showing error, not recognising SM tag present in bam Header
next-gen
markduplicates
picard
alignment
updated 13 months ago by
Ram
43k • written 4.6 years ago by
rohitsatyam102
▴ 850
4
votes
4
replies
1.1k
views
Do we have Alt Aware peak calling tools also?
ChIP-Seq
alignment
genome
4.6 years ago by
rohitsatyam102
▴ 850
58 results • Page
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