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17
votes
14
replies
9.2k
views
Execute commands in Bash Chunk in Rmarkdown
vcftools samtools rmarkdown rstudio
updated 23 months ago by ▴ 250 • written 4.6 years ago by ▴ 100
12
votes
20
replies
4.2k
views
7 follow
How to write out a ID and AA sequence from a SWISS PROT database file into a new file in a specific order using python?
protein python
updated 13 months ago by 43k • written 2.4 years ago by ▴ 100
3
votes
2
replies
3.3k
views
Question: How do I view data in pymol via Ipymol for visualisation in a Jupyter notebook?
pymol jupyter python idle
updated 2.4 years ago by ★ 2.0k • written 4.8 years ago by ▴ 100
2
votes
14
replies
4.5k
views
6 follow
How to calculate the center of mass
Center of Mass proteins physics python
updated 3.4 years ago by • 0 • written 4.3 years ago by ▴ 100
1
vote
1
reply
884
views
Genotype Calling in R 2
genotypes genotype frequencies
3.5 years ago by M.O.L.S ▴ 100
6
votes
3
replies
2.1k
views
What is happening in the Nussinov Algorithm?
Nussinov Algorithm
4.4 years ago by M.O.L.S ▴ 100
0
votes
1
reply
805
views
Base Pair Distance vs. Edit Distance
Distance Base pair nucleotides
4.5 years ago by M.O.L.S ▴ 100
0
votes
4
replies
1.6k
views
File not found error on program installation.
samtools htslib Cpp
updated 11 months ago by 43k • written 4.5 years ago by ▴ 100
3
votes
3
replies
2.0k
views
How to make a phylogenetic tree set in ASTRAL?
phylogeny
4.5 years ago by M.O.L.S ▴ 100
0
votes
5
replies
1.1k
views
genome length and kmer size
genome
4.5 years ago by M.O.L.S ▴ 100
3
votes
2
replies
2.8k
views
How to run the ViennaRNA package
RNA Structure
4.8 years ago by M.O.L.S ▴ 100
1
vote
1
reply
2.0k
views
How to loop through to get the polypeptide sequences of multiple structures using Biopython Bio.PDB module.
Bio Python Polypeptide Bio.PDB
5.2 years ago by M.O.L.S ▴ 100
1
vote
8
replies
3.1k
views
How to calculate the fraction of bases that are different from the reference base using samtools mpileup ?
samtools mpileup snps
updated 13 months ago by 43k • written 5.4 years ago by ▴ 100
5
votes
7
replies
14k
views
How to load data into R from an external hard drive?
R load Rstudio unix
updated 5.4 years ago by 11k • written 5.4 years ago by ▴ 100
2
votes
2
replies
975
views
How to loop through a file to get a value for the coverage in each line of the samtools pileup file?
sequencing
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 100
3
votes
4
replies
3.4k
views
How to read an mpileup file from Samtools into Python
samtools mpileup python next-gen
2.4 years ago by M.O.L.S ▴ 100
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